PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_17973-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 1367aa MW: 152174 Da PI: 6.8867 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 76 | 125 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa+a++ a+++++g TRIUR3_17973-P1 76 AYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGSFPTAVEAARAYDDAARAMYG 125 59****999.**********8...2.359***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.7E-35 | 76 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-19 | 76 | 133 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.9E-11 | 76 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 76 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 77 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 77 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.04E-18 | 77 | 135 | No hit | No description |
PRINTS | PR00367 | 2.5E-8 | 99 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF52540 | 9.57E-10 | 395 | 539 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 5.7E-4 | 395 | 517 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00176 | 9.1E-6 | 405 | 535 | IPR000330 | SNF2-related, N-terminal domain |
SuperFamily | SSF52540 | 5.91E-18 | 573 | 811 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1367 aa Download sequence Send to blast |
METGGSKREG DCPGQERKKK VRRRSTGPDS VAETIKKWKE ENQKLQQENG SRKAPAKGSK 60 KGCMAGKGGP ENSNCAYRGV RQRTWGKWVA EIREPNRGNR LWLGSFPTAV EAARAYDDAA 120 RAMYGAKARV NFSEQSPDAN SGCTLAPPLL TSNGATAASH PSDGKDESES PPSLISNGPT 180 AALHRSDAKD ESESAGTVAR KVKKEVSNDL RSTHEEHKTL EVSQPKGKAL HKEANELGIA 240 LRVGIKLRHI RKSYFCRSYY ILNCCRKVQP HRLTDLCPQN RLAESSLAVE DRGQSIGHTR 300 RSGSSSLRSE PFPTIYSEQH KSMPGDGGPI SIQKEGPASR QLKVKQCPVQ KLQRLPDGCH 360 PDFDNDHLYC VNKLLESWSK SHGSVLVDDK EHILKTILFT MVVLADARQP FLIVTTTASL 420 SLWEVQFNKL APHINVVVHD GRKDMLKSIQ AQQFFENGNH ITSQVLLSHP EAILEDIEPI 480 ARIGWEAIIV DYYQHFALKY LEQLKQLCTG FRVLLVSSPI EDIPEYRNML AFLRSGQKDN 540 SGYVDTADAL EKSKIISAHH IAYERKADSS KFLEHWVPAY ISQVQLGVYC SILLSNSSVL 600 QSKKKANSVE ALRDILLSLS KCCNHPYLRE CLEDSPVNNP DMTETVDIGV HASDKLLLLD 660 KMLKEISNRR LRVIVLFQSG GAGANPMGDI LEGVVCHRFG PESYEHVKCG AVMSSKQAAI 720 DMFNDKTKGR FVLLIESRAC LPSIKLLSVD AVIIYSSDWN PSNDLKALQR INIELQLKYV 780 SIFRLYTPFT VEENNFVLAK QGRLIDSNIQ DVMHSSSHSL LSWGAQFLFT RFDELLQDRY 840 SSKHSERGTS FMDEVILEFV TKLPTYTEDS SKINSVYISK ANMSGEFYSR SITVIGEKEG 900 MSMLDGDPSV FWLNLLDGKS PCWSYISELR QSINRMLQNI EEPAQVAAEE TDEATNVSVT 960 QQRECHVSVT QQRECHVSVD VFPNMAVERR NDLVDDVFSF RENNILHKQQ AEISNLVTHS 1020 QNKQILRIGA TQICGSSMHM QQLRNLPAQQ SLATLPHPPA EAEPAGIPGM EATTCLQSMQ 1080 YQPTEAEWGG ILGALAAHGS QPEMQPSTSM QDVLFEKTDL SGMPLLGSMN ARQSVEPSWD 1140 LHAGEEPAGT LGMVTTDKLQ SEIQQSATVH DRPAEAEGTS TLGTRALQNL HPEMQSSTAM 1200 HHVPLEIAHS EGRSQTGFQP NTSPGPEQLS QLLFFEEELN QVLSASDQPQ EDMSKMYKHH 1260 INLLRKAHEQ KKSQLQIERY REIEKVNRKY YSLLQKEDPT LPHSQMGLVD SYKEASVNKS 1320 PAQDFLGEVA PSSAAQGRSE RPAMVLPPKS SPAQTTASPG APPYDHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5o9g_W | 3e-31 | 367 | 809 | 380 | 843 | Chromo domain-containing protein 1 |
6ftx_W | 2e-31 | 367 | 838 | 198 | 679 | Chromatin-remodeling ATPase |
6g0l_M | 3e-31 | 367 | 809 | 380 | 843 | Chromo domain-containing protein 1 |
6g0l_W | 3e-31 | 367 | 809 | 380 | 843 | Chromo domain-containing protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182859.1 | 0.0 | uncharacterized protein LOC109768534 | ||||
TrEMBL | M7YLU1 | 0.0 | M7YLU1_TRIUA; Dehydration-responsive element-binding protein 2A | ||||
STRING | TRIUR3_17973-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1652 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40350.1 | 2e-31 | ERF family protein |