PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_17833-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 215aa MW: 23669.3 Da PI: 5.5624 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59 | 1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv ++k++G g+W+t ++ + R++k+c++rw +yl TRIUR3_17833-P1 14 KGPWTQEEDEKLVAYIKKHGQGNWRTLPKNADLERCGKSCRLRWTNYL 61 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.985 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.61E-23 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-13 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-8 | 65 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGRAPCCDRT GLKKGPWTQE EDEKLVAYIK KHGQGNWRTL PKNADLERCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNNSA CQMPGLVHAN PAQQLHQDHM VPSDYGQLPG 120 YDNQLELDYV PALMQMASDT SNLQWSSPVT SSNNNNNCNV GSGVSTPSSS PAGRVNSASP 180 TTFCANASNI DAFSADAAGL FDMHLSDLLD VSDYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-17 | 12 | 90 | 5 | 82 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248579 | 1e-135 | AK248579.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178661.1 | 2e-77 | transcription factor MYB6-like | ||||
TrEMBL | A0A446KUK1 | 1e-161 | A0A446KUK1_TRITD; Uncharacterized protein | ||||
TrEMBL | M7ZNN8 | 1e-161 | M7ZNN8_TRIUA; Myb-related protein Myb4 | ||||
STRING | TRIUR3_17833-P1 | 1e-162 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 2e-54 | MYB-like 102 |