PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_17786-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 143aa MW: 15674.2 Da PI: 8.4166

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_17786-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.2	5.6e-13	35	59	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV TRIUR3_17786-P1 35 CGGCRTLLMYTRNADTVRCSCCSTV 59 ***********************99 PP
2	zf-LSD1	45.3	1.4e-14	73	96	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg Crt+L+YP GApsV+Ca+Cd TRIUR3_17786-P1 73 CGRCRTTLMYPHGAPSVKCAICDY 96 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-14	32	62	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.2E-10	35	59	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.0E-12	70	98	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.7E-14	73	97	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MTTLLPRVSP GTRRGERKGS PDALQEAVEM AQLICGGCRT LLMYTRNADT VRCSCCSTVN 60 LVRPVNNIAH VNCGRCRTTL MYPHGAPSVK CAICDYITNI TNTGPTPQPQ NVTVVVENPM 120 TVDEKGKLPM QFYCIEVNVK AEK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009620	1e-121	BT009620.1 Triticum aestivum clone wre1n.pk0126.e11:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196161.1	3e-59	protein LOL3-like isoform X1
Swissprot	Q6ASS2	1e-52	LOL3_ORYSJ; Protein LOL3
TrEMBL	M7YNX6	1e-100	M7YNX6_TRIUA; Uncharacterized protein
STRING	TRIUR3_17786-P1	1e-101	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-28	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]