PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17755-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 788aa    MW: 88516.5 Da    PI: 6.6786
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17755-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-19121234199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..............EEETTEEEE-TTHHHHHHHHT-- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy............rkksgryvltkGWkeFvkangLk 75 
                      f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g  W++++i+            +++++r++l++GW+ Fv++++L 
  TRIUR3_17755-P1 121 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMDWRFRHIFramiivltecksTGQPRRHLLQSGWSVFVSSKRLV 212
                      99*****************************7555544..58***************999*******9888888888***************** PP

                      TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  76 egDfvvFkldgrsefelvvkvfrk 99 
                      +gD ++F   + +++el+v+v+r+
  TRIUR3_17755-P1 213 AGDAFIFL--RGESGELRVGVRRA 234
                      ********..449999*****996 PP

2Auxin_resp111.39.8e-37259340183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+  Wp+S+WrsLk
  TRIUR3_17755-P1 259 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 340
                      89******************************************************************999.9********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-37114248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.09E-36114262IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-16119233No hitNo description
PfamPF023627.0E-17121234IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856121235IPR003340B3 DNA binding domain
SMARTSM010191.2E-13121235IPR003340B3 DNA binding domain
PfamPF065071.2E-33259340IPR010525Auxin response factor
PfamPF023091.9E-12667767IPR033389AUX/IAA domain
SuperFamilySSF542771.57E-12677760No hitNo description
PROSITE profilePS5174524.728683776IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MAPPQAPSAG DPLYDELWHA CAGPLVTVPR VGDLVFYFPQ GHIEQVEASM NQVAGNQMRL  60
YDLPSKLLCR VINVELKAEA DTDEVYAQVM LMPEPEQNEM AVDKSTSTTG ATPPRPAVRS  120
FCKTLTASDT STHGGFSVLR RHADECLPPL DMTQSPPTQE LVAKDLHGMD WRFRHIFRAM  180
IIVLTECKST GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGESGELRVG VRRAMRQLSN  240
VPSSVISSHS MHLGVLATAW HAINTKSMFT VYYKPRTSPS EFIIPYDQYM ESVKNNYSIG  300
MRFRMRFEGE EAPEQRFTGT IVGSENLDQL WPESNWRSLK VRWDEPSTIP RPDRVSPWKI  360
EPASSPPVNP LPLSRVKRPR PNVPPVSPES SVLTKEVAAK IDMDSAQAQQ RNQNNMVLQG  420
QEHMTLRTNN LTASNESDAT VQKPMMWSPS PNIGKNHASA FQQRPSMDNW MQLGRCDASS  480
GAQSFGDSQG FFMQTFDEAP NRHGSFKNQF QDHSSARHFS DPYTKMQTEA NEFHFWNSQS  540
TVYGNPRDQS QGFRFEEHPS NWLRQQQQFS PVEQPRVIRP HASIAPVDLE KTREGSGFKI  600
FGFKVDTTSA PSNHLSSTMA AIHEPVLQTQ ASASLTQLQH AHADCIPELS VSTAGTTENE  660
KSIQQAPHSS KDVQSKSHGA STRSCTKVHK QGVALGRSVD LSKFGDYDEL TAELDRMFEF  720
DGELMSSNKD WQIVYTDPEG DMMLVGDDPW EEFCNIVRKI FIYTKEEVQK MNSKSSTPRK  780
EEGCVKPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1641136517357Auxin response factor 1
4ldw_A1e-1641136517357Auxin response factor 1
4ldw_B1e-1641136517357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376380KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648520.0AK364852.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028N02.
GenBankAK3687850.0AK368785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2079M07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198715.10.0auxin response factor 4-like
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLM7ZI540.0M7ZI54_TRIUA; Auxin response factor
STRINGTRIUR3_17755-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]