PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_17755-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 788aa MW: 88516.5 Da PI: 6.6786 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.4 | 1.5e-19 | 121 | 234 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..............EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy............rkksgryvltkGWkeFvkangLk 75 f+k+lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g W++++i+ +++++r++l++GW+ Fv++++L TRIUR3_17755-P1 121 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMDWRFRHIFramiivltecksTGQPRRHLLQSGWSVFVSSKRLV 212 99*****************************7555544..58***************999*******9888888888***************** PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 +gD ++F + +++el+v+v+r+ TRIUR3_17755-P1 213 AGDAFIFL--RGESGELRVGVRRA 234 ********..449999*****996 PP | |||||||
2 | Auxin_resp | 111.3 | 9.8e-37 | 259 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+ Wp+S+WrsLk TRIUR3_17755-P1 259 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 340 89******************************************************************999.9********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-37 | 114 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.09E-36 | 114 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-16 | 119 | 233 | No hit | No description |
Pfam | PF02362 | 7.0E-17 | 121 | 234 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.856 | 121 | 235 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-13 | 121 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-33 | 259 | 340 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.9E-12 | 667 | 767 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.57E-12 | 677 | 760 | No hit | No description |
PROSITE profile | PS51745 | 24.728 | 683 | 776 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence Send to blast |
MAPPQAPSAG DPLYDELWHA CAGPLVTVPR VGDLVFYFPQ GHIEQVEASM NQVAGNQMRL 60 YDLPSKLLCR VINVELKAEA DTDEVYAQVM LMPEPEQNEM AVDKSTSTTG ATPPRPAVRS 120 FCKTLTASDT STHGGFSVLR RHADECLPPL DMTQSPPTQE LVAKDLHGMD WRFRHIFRAM 180 IIVLTECKST GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGESGELRVG VRRAMRQLSN 240 VPSSVISSHS MHLGVLATAW HAINTKSMFT VYYKPRTSPS EFIIPYDQYM ESVKNNYSIG 300 MRFRMRFEGE EAPEQRFTGT IVGSENLDQL WPESNWRSLK VRWDEPSTIP RPDRVSPWKI 360 EPASSPPVNP LPLSRVKRPR PNVPPVSPES SVLTKEVAAK IDMDSAQAQQ RNQNNMVLQG 420 QEHMTLRTNN LTASNESDAT VQKPMMWSPS PNIGKNHASA FQQRPSMDNW MQLGRCDASS 480 GAQSFGDSQG FFMQTFDEAP NRHGSFKNQF QDHSSARHFS DPYTKMQTEA NEFHFWNSQS 540 TVYGNPRDQS QGFRFEEHPS NWLRQQQQFS PVEQPRVIRP HASIAPVDLE KTREGSGFKI 600 FGFKVDTTSA PSNHLSSTMA AIHEPVLQTQ ASASLTQLQH AHADCIPELS VSTAGTTENE 660 KSIQQAPHSS KDVQSKSHGA STRSCTKVHK QGVALGRSVD LSKFGDYDEL TAELDRMFEF 720 DGELMSSNKD WQIVYTDPEG DMMLVGDDPW EEFCNIVRKI FIYTKEEVQK MNSKSSTPRK 780 EEGCVKPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-164 | 11 | 365 | 17 | 357 | Auxin response factor 1 |
4ldw_A | 1e-164 | 11 | 365 | 17 | 357 | Auxin response factor 1 |
4ldw_B | 1e-164 | 11 | 365 | 17 | 357 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 376 | 380 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364852 | 0.0 | AK364852.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028N02. | |||
GenBank | AK368785 | 0.0 | AK368785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2079M07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198715.1 | 0.0 | auxin response factor 4-like | ||||
Swissprot | Q5JK20 | 0.0 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | M7ZI54 | 0.0 | M7ZI54_TRIUA; Auxin response factor | ||||
STRING | TRIUR3_17755-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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