PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_17709-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 411aa MW: 46278.6 Da PI: 5.8839 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00043 | 44 | 67 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 +C dCgk+++++ + H ++ H TRIUR3_17709-P1 44 VCADCGKPCRSQTEVDLHKKRtgH 67 7*****************998666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 8 | 30 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF46934 | 3.83E-17 | 102 | 165 | IPR009060 | UBA-like |
Gene3D | G3DSA:1.10.8.10 | 4.5E-11 | 102 | 157 | No hit | No description |
PROSITE profile | PS50030 | 11.222 | 111 | 152 | IPR015940 | Ubiquitin-associated domain |
CDD | cd14290 | 3.23E-20 | 111 | 159 | No hit | No description |
SMART | SM00165 | 7.9E-5 | 113 | 151 | IPR015940 | Ubiquitin-associated domain |
Pfam | PF00627 | 5.5E-6 | 113 | 149 | IPR015940 | Ubiquitin-associated domain |
SuperFamily | SSF143503 | 1.19E-24 | 304 | 407 | IPR018997 | PUB domain |
CDD | cd10461 | 1.48E-59 | 306 | 411 | No hit | No description |
Pfam | PF09409 | 1.3E-20 | 319 | 389 | IPR018997 | PUB domain |
SMART | SM00580 | 8.0E-21 | 322 | 384 | IPR018997 | PUB domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 411 aa Download sequence Send to blast |
MAGLSLRCGD CGVQLRSVEE AQAHAEATSH TNFAESTEAV LNLVCADCGK PCRSQTEVDL 60 HKKRTGHAEF TDKTMEAAKP IDLEAPPKPA SEAMDVDASG SAEPQELVSP EVNKEMLGEL 120 ESMGFSTARA TRALHFSGNS TIEGAINWLS EHQEDPDIDE MPMVPANTVA NKPSLTEEEK 180 KIKAQELRER ARKKKEEEEK RMEREREKER IRIGKELLEA KKMEELNERK RIIELRRLEK 240 EEEKRAREKI RQKLEEDKAE RRRKLGLPAE APAASKPSAP PPVEEKKSAF LPVRPATKAE 300 RMRDCLRNIK QQNKEEDAKV KRAFQTLLTY IGNVVKNPDE EKFRKIRLTN ATFQERVGSL 360 GGIEFLELCG FEKPEGEEIL FLARDKVDKA VLNVAGAELN SAITNPFFGV L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK250512 | 0.0 | AK250512.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf74j13, mRNA sequence. | |||
GenBank | AK360059 | 0.0 | AK360059.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1109E20. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150585.1 | 0.0 | chromatin assembly factor 1 subunit A | ||||
TrEMBL | A0A446V592 | 0.0 | A0A446V592_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453N639 | 0.0 | A0A453N639_AEGTS; Uncharacterized protein | ||||
TrEMBL | M7ZHW7 | 0.0 | M7ZHW7_TRIUA; UBX domain-containing protein 1-A | ||||
STRING | TRIUR3_17709-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8464 | 15 | 17 |