PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17479-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 349aa    MW: 39730 Da    PI: 9.6555
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17479-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.1e-172613491799
                      E--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  17 vlpkkfaeeh.ggkkeesktltled.esgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      +l  kfa+ h +  +++s+ l+l+   ++rsW+ kl+y      + +r+ + kGW++F+++n+L+egD ++Fkl+++ ++ +++v ++r+
  TRIUR3_17479-P1 261 YLLQKFAAGHhD-GNNSSISLVLQReGKSRSWTTKLNYrhrtLDTTNRMGIYKGWESFAHDNHLREGDLCLFKLMDNeEQLTMMVYIVRR 349
                      577889888853.4468999999995566*******9976664455557888***********************998*******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-1012115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-1013120IPR015300DNA-binding pseudobarrel domain
CDDcd100177.37E-719117No hitNo description
SMARTSM010190.06519116IPR003340B3 DNA binding domain
PROSITE profilePS508636.54119122IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-14231348IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-15231348IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.647245349IPR003340B3 DNA binding domain
SMARTSM010190.0023253348IPR003340B3 DNA binding domain
PfamPF023621.2E-14261349IPR003340B3 DNA binding domain
CDDcd100178.97E-14265345No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
QKVKIDALIE KIQPKITVLV VQMKKTNAKR HGTLVIQKDY AREHFPCEDT TVILQLPGKK  60
KHWKCTFHIT PSGMPDAGRR NLNLRNFSCD NHVSTGDICL FQPMTNVKHR RFRVTVHLLH  120
KASIAHYPGG RTDIVSNHGS TSATMGGVKE EPPTDGNKML ALLGCMCTSV PIISLIYVKT  180
CPGEVYSSEH EQCKVSEDSQ GASESLFILA DRACLTPAQY LKCLGKVEEI KFKPPFYVSI  240
VSKSMRQFPM LNFVWQYAAR YLLQKFAAGH HDGNNSSISL VLQREGKSRS WTTKLNYRHR  300
TLDTTNRMGI YKGWESFAHD NHLREGDLCL FKLMDNEEQL TMMVYIVRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198704.11e-152B3 domain-containing protein Os03g0620400-like
TrEMBLT1MIA20.0T1MIA2_TRIUA; Uncharacterized protein
STRINGTRIUR3_17479-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172