PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_17397-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 913aa MW: 101361 Da PI: 8.3916 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.8e-08 | 387 | 431 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v++ G+++W Ia +g+ Rt+ qc r+q TRIUR3_17397-P1 387 NAWTACEEKRLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 431 68*****************************99**********96 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.4e-14 | 440 | 484 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd++lv av+ +G + W ++++ + gR ++qc +rw+k l TRIUR3_17397-P1 440 RAWTKEEDLQLVAAVQTFGCN-WQLVSASLV-GRIGNQCSNRWRKTL 484 68*****************88.*********.************975 PP | |||||||
3 | Myb_DNA-binding | 43 | 1e-13 | 492 | 537 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+++Ed++l+ vk + +g+W++Ia+ ++ gRt qc +rw+++l TRIUR3_17397-P1 492 GRWSEDEDKRLLVSVKFFRSGSWNKIAQFVP-GRTQSQCSERWRNVL 537 8******************************.************986 PP | |||||||
4 | Myb_DNA-binding | 33.8 | 8.1e-11 | 544 | 587 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g W +eEd +l+ v++ G+ W++Ia m +Rt+++c rw TRIUR3_17397-P1 544 GEWRPEEDSKLLASVHEVGPC-WSKIAGAMIPHRTDNMCLRRWKR 587 79*****************88.*****99999***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.075 | 284 | 380 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.049 | 288 | 382 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-12 | 290 | 307 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-12 | 352 | 393 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-15 | 361 | 429 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.478 | 381 | 433 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.0E-4 | 385 | 435 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-6 | 387 | 431 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-12 | 394 | 440 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.42E-19 | 419 | 484 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.893 | 434 | 488 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-12 | 438 | 486 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-12 | 439 | 483 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-9 | 441 | 484 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-16 | 441 | 484 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 10.499 | 486 | 537 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-18 | 487 | 539 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-24 | 488 | 585 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-12 | 490 | 539 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.86E-11 | 493 | 537 | No hit | No description |
Pfam | PF13921 | 2.3E-13 | 494 | 554 | No hit | No description |
PROSITE profile | PS51294 | 17.351 | 538 | 593 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-15 | 540 | 592 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-10 | 542 | 591 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-8 | 545 | 588 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 913 aa Download sequence Send to blast |
MDFYSDDDSD PDFDEGLQED LDLVRRSCIT AGAEPDAAVA QASSYLAVPA ATTTTAGGAG 60 GGGGLSSDEG DEDLALVRSI RENLHLNKAS PSSPRPICAW PPSDAEDDEE DDLETLRAIQ 120 RRFSHYHSGT STGPLENMKN EASKGGDDEF IAHRPGEEDV QKKDTNANTQ TGFPKAALLL 180 VDALKKNRAC QKFIRRKMIN IEAKIEVNKD LRDRVKCLMD YQLSCRRSFG KVLCQKVDPR 240 VRLISSQKQS AQSAKNKYKI SALLLGPAEN PHVEKYKAVL KQFPVSLQKH PWSDVEKDRL 300 AKGIKQQYQE TLIKDSLKNG SGDFSAVDMA YALTNTVGNF EATPEILRSV LPLVNWDYIA 360 AMYLPGRSGA ECESRWLNHD DPRINHNAWT ACEEKRLILT VQEKGMHNWI NIAVALGTQR 420 TPFQCLARYQ RSLNPHILKR AWTKEEDLQL VAAVQTFGCN WQLVSASLVG RIGNQCSNRW 480 RKTLIPERKR VGRWSEDEDK RLLVSVKFFR SGSWNKIAQF VPGRTQSQCS ERWRNVLDPD 540 IDHGEWRPEE DSKLLASVHE VGPCWSKIAG AMIPHRTDNM CLRRWKRLCQ DELPLIVAAN 600 QVKKSIFQNN FVDRETERPA ICPSDFPSLV YSKVDRGDES TVRSGAENQT GEDVTVSDGV 660 NNSSRGHSKA RKRKVTTDGD VVVQKRMRGS ISIDNELTLD MFGGPISFNN EALTNQKRDP 720 TSVGKEGTAK KRTRGTVSVG NEGAVKKKMR GSISVGEGRA VKNRMRGSVS IDNQGNTTKR 780 KRVSRKSAKG NSTTDGGVNA CELDLPSMPS ETSAERHIDT GNTNKMKRKS TPRPKQINME 840 EGTVDEYSRL ADCISFARGN GASKNNSAMP LNNAIQSDGP SGENLQVAIS ARLDPTSVEQ 900 LTEDSSCQLD DNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-23 | 359 | 608 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-23 | 359 | 608 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 728 | 734 | AKKRTRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368554 | 0.0 | AK368554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150877.1 | 0.0 | uncharacterized protein LOC109736068 | ||||
TrEMBL | M7ZUF2 | 0.0 | M7ZUF2_TRIUA; Myb-like protein L | ||||
STRING | TRIUR3_17397-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-147 | myb domain protein 4r1 |