PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17294-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 330aa    MW: 35124.8 Da    PI: 6.2325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17294-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llvd++++ G g+W++ ++  g++R++k+c++rw +yl
  TRIUR3_17294-P1 15 KGPWTPEEDKLLVDYIQEKGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding53.94.3e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T +E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
  TRIUR3_17294-P1  68 RGLFTDDEEKLIVHLHSLLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113
                      7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0971062IPR017930Myb domain
SuperFamilySSF466897.11E-3012109IPR009057Homeodomain-like
SMARTSM007171.1E-141464IPR001005SANT/Myb domain
PfamPF002497.6E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-231669IPR009057Homeodomain-like
CDDcd001678.62E-121762No hitNo description
PROSITE profilePS5129427.14263117IPR017930Myb domain
SMARTSM007171.4E-1567115IPR001005SANT/Myb domain
PfamPF002491.9E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2570117IPR009057Homeodomain-like
CDDcd001672.22E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRLPCCDGE AGVKKGPWTP EEDKLLVDYI QEKGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGL FTDDEEKLIV HLHSLLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLGM  120
GIDPVTHRPR TDLSLLAGLP GLLAAAGIFG GSGAATAAWD MNALKLQVDA ATFQLLQGLV  180
RALTTAAAPA PAPALGMDNL MALLAVSNGG HHGGVDQNML LQQCQWNDMN NLPVLTSSAP  240
TSGMHNISGM FDGFSAGDGL SSTELGDHGG ASGSNVTVDR MVASDQECNN NGGGGVSCEQ  300
TPASSPFGGL ESLNLMDELN TDGGWKDLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-29151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-29151174105C-Myb DNA-Binding Domain
1msf_C2e-29151174105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276651e-134KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162283.10.0transcription factor MYB39-like
SwissprotQ9S9Z22e-78MYB93_ARATH; Transcription factor MYB93
TrEMBLM8A1I50.0M8A1I5_TRIUA; Transcription factor MYB39
STRINGTRIUR3_17294-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-77myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]