PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_17194-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 195aa MW: 20344.2 Da PI: 10.4783 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.2e-08 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIUR3_17194-P1 32 KTKLCNKYNTAEGCKWGDKCHFAHGE 57 8***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-14 | 28 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-8 | 29 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.216 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-5 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54814 | 2.75E-6 | 98 | 137 | IPR009019 | K homology domain, prokaryotic type |
PROSITE profile | PS50084 | 11.049 | 101 | 141 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.2E-5 | 103 | 137 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 9.0E-7 | 103 | 138 | IPR004088 | K Homology domain, type 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSNLGGQAFA HPQGRMPAES AVPDGQPTPT VKTKLCNKYN TAEGCKWGDK CHFAHGEREL 60 GKHTFINNSM PPRMGTRPIG HFGPPAMPGP AMTTPTGFGA SSTAKVSVDA SLVGGIIGRG 120 GVNTKQISGV TGAKLAIRLE DLTAAAAVGR EATSRPSCAT TSRKDRARLA TDATLPMART 180 SCANRLPREV DLPTH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ390773 | 1e-144 | HQ390773.1 Triticum aestivum clone UCDTA01224 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164455.1 | 2e-84 | zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_020164559.1 | 8e-85 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 4e-64 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | M7ZLH7 | 1e-140 | M7ZLH7_TRIUA; Zinc finger CCCH domain-containing protein 14 | ||||
STRING | TRIUR3_17194-P1 | 1e-141 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-12 | C3H family protein |