PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17193-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 325aa    MW: 34005.5 Da    PI: 9.8994
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17193-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07121146227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC+ +     Ck Gd+C+FaHg+
  TRIUR3_17193-P1 121 KTKLCNKYNTAEGCKWGDKCHFAHGE 146
                      8***********************96 PP
2zf-CCCH35.51.7e-11291316127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC++f + G C +GdrC+FaHg+
  TRIUR3_17193-P1 291 FKTKLCDNFTK-GSCTFGDRCHFAHGE 316
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.3995981IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-13116149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8118150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216119147IPR000571Zinc finger, CCCH-type
SMARTSM003560.063119146IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-5121146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.101.3E-14188258IPR004088K Homology domain, type 1
SMARTSM003221.0E-8189259IPR004087K Homology domain
PROSITE profilePS5008414.571190254IPR004088K Homology domain, type 1
PfamPF000131.2E-10192256IPR004088K Homology domain, type 1
CDDcd001051.20E-12192254No hitNo description
SuperFamilySSF547918.8E-14192290IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.7E-16288321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.821290317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-9290320IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-8290316IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9291316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEGGGRKRGT ADGAAVGGKR TRESESFQTG VGSKSKPCTK FFRLVPLYIR TSFTVELLFC  60
PFGFTAGCPF GEGCHFLHYF PGGHQAVAKM SNLGGQAFAH PQGRMPSGSA VPDGHPTPTV  120
KTKLCNKYNT AEGCKWGDKC HFAHGERELG KQTFINNSMP PHMGPRPTGH FGPPAMPSPG  180
MATPAGFGAS STAKVSVDAS LAGAIIGRGG VNTKQISRVT GAKLAIRDHE SNEALKNIEL  240
EGTFDQINNA SAMLRELIFR ISGGANAPPP GVIPAGGSHR GGGGGGQGSN FKTKLCDNFT  300
KGSCTFGDRC HFAHGENELR KSAAV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164455.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-155C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM7ZYK30.0M7ZYK3_TRIUA; Zinc finger CCCH domain-containing protein 14
STRINGTRIUR3_17193-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-55C3H family protein