PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_16874-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 28896.5 Da PI: 6.1643 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.3e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++ Ede+l++ + ++G g+W++++r g++R++k+c++rw++yl TRIUR3_16874-P1 8 KGLWSPVEDEKLYNHIIRHGVGCWSSVPRLAGLHRCGKSCRLRWLNYL 55 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 61 | 104 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ TRIUR3_16874-P1 61 RGSFSQQEEDHIVALHQILGNR-WSQIASRLP-GRTDNEIKNFWNS 104 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-21 | 3 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.991 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.13E-27 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.26E-10 | 11 | 55 | No hit | No description |
PROSITE profile | PS51294 | 23.445 | 56 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 59 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-14 | 61 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.60E-9 | 63 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGQPKLRKGL WSPVEDEKLY NHIIRHGVGC WSSVPRLAGL HRCGKSCRLR WLNYLRPDLR 60 RGSFSQQEED HIVALHQILG NRWSQIASRL PGRTDNEIKN FWNSCIKKKL RQQGIDPATQ 120 KPMGAMATAA LPDVEMEDRK ALSTVVDGGL AQKQQLVFDP FPFGGGKEGA DDDAGFGTGD 180 YSCVLGVSEN LGYGESSSNS SNWNYGGEVG NVLDGEVLDW AKAEMERQHD QLLEHKFSLP 240 CPEQSLLANF EFNLEQYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 2 | 110 | 1 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM066946 | 1e-176 | KM066946.1 Triticum aestivum R2R3-MYB transcription factor (MYB86) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158685.1 | 1e-157 | myb-related protein Hv33-like | ||||
Swissprot | P20027 | 1e-132 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | M7YV04 | 0.0 | M7YV04_TRIUA; Myb-related protein Hv33 | ||||
STRING | TRIUR3_16874-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 5e-70 | myb domain protein 86 |