PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16862-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 317aa    MW: 36210.4 Da    PI: 10.2951
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16862-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-1790137148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed +lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  TRIUR3_16862-P1  90 KGPWTEQEDMQLVCTVHLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 137
                      79********************************************97 PP
2Myb_DNA-binding55.31.6e-17143188148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  TRIUR3_16862-P1 143 RGRMTPHEERLILELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 188
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.27585137IPR017930Myb domain
SMARTSM007171.7E-1589139IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-2989184IPR009057Homeodomain-like
PfamPF002492.0E-1690137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2091144IPR009057Homeodomain-like
CDDcd001671.55E-1192137No hitNo description
PROSITE profilePS5129425.955138192IPR017930Myb domain
SMARTSM007171.4E-16142190IPR001005SANT/Myb domain
PfamPF002495.2E-15143187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-24145191IPR009057Homeodomain-like
CDDcd001675.85E-12145188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MADKKGGMVS SVPMIMADKK ANTAFHIKRT EKENQGNQIE TSPRFPFPIT SKRLEFIKDL  60
VLKLEPTSTQ RKKSKKTGSQ PIQVREETRK GPWTEQEDMQ LVCTVHLFGE RRWDFIAKVS  120
GLNRTGKSCR LRWVNYLHPG LKRGRMTPHE ERLILELHAR WGNRWSRIAR KLPGRTDNEI  180
KNYWRTHMRK KAQERKRNVS PSPSSSSVTY QSIQPQTPSI MGIGEQELHG GSSCITSILK  240
GTPADMDGYL MDQIWMEIEA PSGVNFHDGK DNSYSSPSGP LLPSPMWDYY SPEAGWKMDE  300
IKMAPQVSYS KGIGPSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27871921105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0095360.0BT009536.1 Triticum aestivum clone wr1.pk0139.g11:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201687.11e-175myb-related protein MYBAS2-like isoform X1
SwissprotQ4JL761e-128MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLM7ZU890.0M7ZU89_TRIUA; Myb-related protein MYBAS2
STRINGTRIUR3_16862-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-73myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]