PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_16468-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 427aa MW: 46162.5 Da PI: 6.2376

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_16468-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	49.3	1.2e-15	11	80	3	72
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwala 72 ++d lP + +++i+k++lP + ++++d+++++ ec +efi +++se++d c r+++kti+++ ++ al TRIUR3_16468-P1 11 KEDVSLPKSTMTKIIKEMLPPDVRVARDTQDLLVECCVEFINLLSSESNDVCSRDDKKTIAPEHVIRALQ 80 67999************************************************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.4E-23	8	82	IPR009072	Histone-fold
SuperFamily	SSF47113	7.84E-23	12	106	IPR009072	Histone-fold
Pfam	PF00808	6.4E-18	15	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MDPMDIVGKS KEDVSLPKST MTKIIKEMLP PDVRVARDTQ DLLVECCVEF INLLSSESND 60 VCSRDDKKTI APEHVIRALQ ASPLSINEQR KYISSEPKLS TKGNGKGRAS SASPETHCER 120 VSSTHSPWGE NPTTLSQKII LTKGKENVQH SNEETEHIQS ITPTQGANST TKENNQQRQP 180 TGTTQRMVSA LSVPRSIILS SSTNAHQDLG FKEYVEEVYA AYEQHKLETL SILTLPLAQD 240 SPKATKFTGI EMTEEEAVAE QQRMFAEARA RMNNGAAKPK EPALEPQNQP QQPPQPHLQL 300 HPQAQQPPQP QPQPHYPQSQ QPLQPFTQAP PQQPLHPQLQ QYTQAPPQQP LQPPLQLYPQ 360 AQPEQPLHSQ SSGSTTGTCV ISAAAPSATG TTAAATSAPA IPAISTAAPS ATPADASAAA 420 ATSTPAT

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MDPMDIVGKS KEDVSLPKST MTKIIKEMLP PDVRVARDTQ DLLVECCVEF INLLSSESND  60
VCSRDDKKTI APEHVIRALQ ASPLSINEQR KYISSEPKLS TKGNGKGRAS SASPETHCER  120
VSSTHSPWGE NPTTLSQKII LTKGKENVQH SNEETEHIQS ITPTQGANST TKENNQQRQP  180
TGTTQRMVSA LSVPRSIILS SSTNAHQDLG FKEYVEEVYA AYEQHKLETL SILTLPLAQD  240
SPKATKFTGI EMTEEEAVAE QQRMFAEARA RMNNGAAKPK EPALEPQNQP QQPPQPHLQL  300
HPQAQQPPQP QPQPHYPQSQ QPLQPFTQAP PQQPLHPQLQ QYTQAPPQQP LQPPLQLYPQ  360
AQPEQPLHSQ SSGSTTGTCV ISAAAPSATG TTAAATSAPA IPAISTAAPS ATPADASAAA  420
ATSTPAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	4e-20	12	81	12	80	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF464903	0.0	AF464903.1 Triticum aestivum repressor protein (Dr1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235094.1	1e-51	nuclear transcription factor Y subunit beta
TrEMBL	M8A6B0	0.0	M8A6B0_TRIUA; Protein Dr1-like protein
STRING	TRIUR3_16468-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	4e-48	nuclear factor Y, subunit B13