PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_16398-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 529aa MW: 57022.8 Da PI: 6.2814 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.7 | 4e-08 | 296 | 333 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA++ gL+ qV++WF N R + TRIUR3_16398-P1 296 FEHflHPYPKDSEKVMLARQAGLSRGQVSNWFINARVR 333 554459******************************88 PP | |||||||
2 | BELL | 115.3 | 3.2e-37 | 158 | 229 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+akpYt+lAl++iSrhFr+L+dai q+ TRIUR3_16398-P1 158 ERQDLQNKVTALMAMLDQVDRRYRHYHQQMQMVVSSFDAVAGSGAAKPYTALALQTISRHFRSLRDAIGAQV 229 799*****************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.3E-51 | 90 | 227 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-48 | 96 | 225 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.839 | 274 | 337 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.2E-8 | 277 | 341 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.55E-11 | 277 | 338 | No hit | No description |
SuperFamily | SSF46689 | 2.57E-16 | 278 | 344 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 280 | 343 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.2E-16 | 294 | 333 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MATFFSTSND QRGLAGGGGG GGDMSFHHHY PMSNQYPDSS TGGLIPLPAS IVQQSHIAHH 60 GGGGDGRDDE TAAFMSPNQS AMAMAASRNA QVNVYVQNSR FLKAARELLD EVVSVRDAIK 120 RKGDRKDDSA GNGECGKVEG DKGEENEGSP AAELSPAERQ DLQNKVTALM AMLDQVDRRY 180 RHYHQQMQMV VSSFDAVAGS GAAKPYTALA LQTISRHFRS LRDAIGAQVQ SARRSLGEPQ 240 DGSGAGGLSR LRYIDQHLRQ QRAMQQFGMM QQPQHAWRPQ RGLPESAVSV LRAWLFEHFL 300 HPYPKDSEKV MLARQAGLSR GQVSNWFINA RVRLWKPMVE EMYKEEFGAE MDSTNSSSEN 360 AGNKHGKVDE AACSEDQDRD EFQSTSTHAG ASQLLNAYKS EPVGSMDAGP LSSLGGGDMG 420 TTYAPAGLSL NHHGPGGGSL LQDAFAHHGG DDARFVTYGG SMGDLGGSVS LTLGLQHCNN 480 NNNNNAGHVP PEQQGLLYGN PGDFDFLNGG DDRQRFASSS SQLLHDFVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 283 | 340 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 283 | 340 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 1e-16 | 283 | 341 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-16 | 283 | 341 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367579 | 0.0 | AK367579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165933.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | M7ZIZ1 | 0.0 | M7ZIZ1_TRIUA; BEL1-like homeodomain protein 6 | ||||
STRING | TRIUR3_16398-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP901 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-116 | BEL1-like homeodomain 7 |