PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_16287-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 391aa MW: 43635 Da PI: 7.9329 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.2 | 1.1e-10 | 137 | 195 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r NR +A rs +RK +i eLe+kv++L ae ++L +l l a l +e+ TRIUR3_16287-P1 137 KKAKRIWANRQSAARSKERKMRYISELERKVQTLHAEATTLSTQLALLHRDTAGLSTEN 195 899******************************************99998888777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.8E-15 | 133 | 197 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.519 | 135 | 198 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-9 | 137 | 195 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.41E-10 | 137 | 188 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-10 | 137 | 191 | No hit | No description |
CDD | cd14703 | 5.30E-22 | 138 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MGKLQLCPVD WSIPALTFST MDEEAVAYSW REGVRRRGDG PSLSDENEEE FFSMFLDAEK 60 LNAQLREASE TESSCASAGA GAGPRPRHHH SHSMDASSSF DAEQLLGAPS VEGMSTVEAK 120 KAMSNAKLAE LALVDPKKAK RIWANRQSAA RSKERKMRYI SELERKVQTL HAEATTLSTQ 180 LALLHRDTAG LSTENSELKM RLQNVEQQIH LQDALNDALK SELQRLKMAT SHMGNTVGGM 240 MNLIGPPPPH SFGGNQPMFH IQGQAAMQPL HQMQQIHPQH QQPLLHPLQL QAQQLLLQQQ 300 ASAAPPPNPK MKRAISAPNQ WIGGWCGCLL KENVTNSCRF FGFENFWGLQ VRMSVEGKCY 360 QLMQILRIVF FVLIWGLFIV DSWSLLVTGK F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376677 | 0.0 | AK376677.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3131F12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181798.1 | 1e-174 | transcription factor RF2a-like | ||||
Refseq | XP_020181799.1 | 1e-174 | transcription factor RF2a-like | ||||
Swissprot | Q69IL4 | 5e-88 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | M7YN88 | 0.0 | M7YN88_TRIUA; Transcription factor RF2a | ||||
STRING | TRIUR3_16287-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4269 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 3e-61 | bZIP family protein |
Publications ? help Back to Top | |||
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