PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_15696-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HRT-like
Protein Properties Length: 549aa    MW: 60009.9 Da    PI: 9.8648
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_15696-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like55.21.1e-17303333131
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      +CGv+ledGs C + P +gRKRCe HKG+R+
  TRIUR3_15696-P1 303 VCGVMLEDGSSCLEDPLEGRKRCELHKGRRV 333
                      7*****************************7 PP
2HRT-like28.42.7e-09464490128
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 
                      iCG+ +++G  Ck  Pv gR RCeeH G
  TRIUR3_15696-P1 464 ICGAVTDNG-YCKLAPVAGRERCEEHRG 490
                      8*******9.6***************98 PP
3HRT-like52.39.7e-17510539130
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                      +CG++ +dGs+Ck+qP+ gRKRC+ HKG+R
  TRIUR3_15696-P1 510 VCGARASDGSPCKNQPIAGRKRCALHKGQR 539
                      7****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004654.6E-570176IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MPLVAAARLK REDCPRTKHD SLFSPWKVLV GPSDWEDHSA GKEGVQRYHT RNLPDNFPGL  60
YELGIARPSY DGVRARRNRS VVVVVVYLGQ ADNVRARLQQ YGRTGSHLDA GNPLATVGKA  120
EVNTFTAGPG LFREVFSRGY SVMFRCALMG SKKAAEKTEA QLLGVFDYAW NKLQNGACRR  180
EEILLKLEQG SHRLSLLGRV RHLKQRVFGE KAGIKINSTG SVEISSGSMK NMLPRVRTFV  240
GFRPRLVNSG DDLNEAIDIH RKCTPQANTA GNKQAHRRSE GYKVKKVDVI ERRTAPIREA  300
EAVCGVMLED GSSCLEDPLE GRKRCELHKG RRVRVAYSRK VSSSSSTCPV AIPTVESIPQ  360
QTANPSKPDQ AWQTSADQSK NLSTNAKEPS LQRSSLEAKE MKIGEAPTED EAYGTSHAES  420
QFHQDEPVGR KWFELLKAQK SASAPSLRGQ GCQTREANDN ASAICGAVTD NGYCKLAPVA  480
GRERCEEHRG IEVTGASSAP CSGRSGWPSV CGARASDGSP CKNQPIAGRK RCALHKGQRA  540
CCASTPSVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2520400.0AK252040.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148d05, mRNA sequence.
GenBankAK3627340.0AK362734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159698.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLM8A1340.0M8A134_TRIUA; Uncharacterized protein
STRINGTRIUR3_15696-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-59effector of transcription2