PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_15386-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 278aa    MW: 29998.7 Da    PI: 4.3297
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_15386-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.91e-16156190133
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                      C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ k
  TRIUR3_15386-P1 156 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANK 190
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.1435590IPR010399Tify domain
SMARTSM009792.6E-85590IPR010399Tify domain
PfamPF062001.9E-125889IPR010399Tify domain
PfamPF062032.3E-10124156IPR010402CCT domain
PROSITE profilePS510179.475124166IPR010402CCT domain
SuperFamilySSF577166.65E-11148196No hitNo description
PROSITE profilePS501148.563150199IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-8150203IPR000679Zinc finger, GATA-type
CDDcd002023.45E-14155196No hitNo description
Gene3DG3DSA:3.30.50.102.6E-14155192IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440156183IPR000679Zinc finger, GATA-type
PfamPF003202.6E-14156190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MRCGAAAAGD EDGSEDDAEE EEEEHDEVEE EEEEEELPPA EEPPSPAAPE PVSSFPGNPN  60
QLTLLFQGEV YVFESVTPDK VQAVLLLLGT GEIPPGLSAM VLPSQRENRG YEDLLQRTDI  120
PAKRVASLIR FREKRKGRNF DKQIRYAVRK EVAHRCQNCG TSEKMTPAMR RGPAGPRTLC  180
NACGLMWANK FSVSPLLLPV VMEGTLRSCS KAKVEAPMLA IEQCNAAVAQ CQTGTDVKAL  240
PAPNNYDVAP SNGEAMDNSV TANATAAAME GAPKAQSE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547461e-162AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175150.11e-131GATA transcription factor 18-like isoform X3
SwissprotQ10F251e-103GAT18_ORYSJ; GATA transcription factor 18
TrEMBLM8ADD90.0M8ADD9_TRIUA; GATA transcription factor 24
STRINGTRIUR3_15386-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-51ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]