PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_15335-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 91aa MW: 10216.7 Da PI: 7.0712 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.7 | 6.7e-11 | 2 | 33 | 4 | 38 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-S CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKl 38 +h ++Er+RR+++N+ ++ Lr+l+P+++ +++ TRIUR3_15335-P1 2 THIAVERNRRKQMNEYLAALRSLMPPSY---AQRG 33 8*************************84...3333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.99E-6 | 1 | 32 | No hit | No description |
SuperFamily | SSF47459 | 1.74E-9 | 1 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.185 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-8 | 2 | 34 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-9 | 2 | 39 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MTHIAVERNR RKQMNEYLAA LRSLMPPSYA QRGHRLTVLH LNMSSAGHMV LYSLSLKVED 60 DCQLTSVAEI ATAAHQIVEK IQEEQELTAA A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005399 | 5e-39 | AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02. | |||
GenBank | AP005574 | 5e-39 | AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08. | |||
GenBank | AP014965 | 5e-39 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 5e-39 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148028.1 | 1e-28 | transcription factor bHLH94-like | ||||
TrEMBL | M8AHV5 | 9e-60 | M8AHV5_TRIUA; Transcription factor bHLH96 | ||||
STRING | TRIUR3_15335-P1 | 1e-60 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10462 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 8e-18 | bHLH family protein |