PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_15041-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 142aa MW: 15713.7 Da PI: 5.1837

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_15041-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.1	7.1e-27	1	48	4	51
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +rWt+ LH+rF++av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ TRIUR3_15041-P1 1 MRWTTALHARFMHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 48 79********************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.51E-12	1	48	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.2E-23	1	48	IPR009057	Homeodomain-like
Pfam	PF00249	3.0E-6	1	48	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.8E-20	1	48	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MRWTTALHAR FMHAVQLLGG HERATPKSVL ELMNVKDLTL AHVKSHLQAS GRWWWWTQEE 60 EEDVVAMAEA KEEAAGHLPL GVHGGVEGAV SGNYCSSPAS SSPSLASFEL LADDTFVPNL 120 EISLGRHDWG MEHPEELSLK YL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-14	1	48	5	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-14	1	48	5	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-14	1	48	4	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-14	1	48	4	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-14	1	48	4	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-14	1	48	4	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-14	1	48	5	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-14	1	48	5	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-14	1	48	5	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-14	1	48	5	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-14	1	48	5	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-14	1	48	5	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374118	3e-84	AK374118.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054O18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020193685.1	3e-33	uncharacterized protein LOC109779471
Swissprot	Q9FJV5	1e-25	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	M7Z9F1	9e-99	M7Z9F1_TRIUA; Putative transcription factor KAN4
STRING	TRIUR3_15041-P1	2e-99	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	2e-25	G2-like family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]