PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_15020-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 283aa    MW: 30664.5 Da    PI: 7.236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_15020-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.9e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d + ++G  +W+t++ + g+ R +k+c++rw +yl
  TRIUR3_15020-P1 15 KGLWSPEEDQKLRDFIVRYGHSCWSTVPVKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP

2Myb_DNA-binding49.11.3e-1570113348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       ++  E+e l  +++ lG++ W+ Ia++++ gRt++++k++w++yl
  TRIUR3_15020-P1  70 MFSRAEEETLMSLHATLGNK-WSQIAQHLP-GRTDNEVKNYWNSYL 113
                      58899***************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-201065IPR009057Homeodomain-like
PROSITE profilePS5129413.9641062IPR017930Myb domain
SuperFamilySSF466891.39E-2713109IPR009057Homeodomain-like
SMARTSM007171.9E-101464IPR001005SANT/Myb domain
PfamPF002492.2E-121562IPR001005SANT/Myb domain
CDDcd001677.63E-101862No hitNo description
PROSITE profilePS5129423.78363117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2566116IPR009057Homeodomain-like
SMARTSM007173.4E-1367115IPR001005SANT/Myb domain
PfamPF002491.3E-1469113IPR001005SANT/Myb domain
CDDcd001672.26E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI VRYGHSCWST VPVKAGLQRN GKSCRLRWIN  60
YLRPGLKHGM FSRAEEETLM SLHATLGNKW SQIAQHLPGR TDNEVKNYWN SYLKKRVEGA  120
RSPAKSAGSD APRSPTPSDS ARERSTVNQP SISGSSGPLE SSSMADDSSN LTVPGVVASI  180
RPHTPVLPKV MFADWLDMDM DMDYGTGLMA PSALDAAFDG SPAQQGVSHQ GGVQVDGMCG  240
AVDSLHGLGN EGICWEFDAG QIHMQGGAGF CDLLSVSEFL GIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25151187109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705130.0AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156817.10.0transcription factor LAF1-like
TrEMBLM7YXG40.0M7YXG4_TRIUA; Transcription factor LAF1
STRINGTRIUR3_15020-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.13e-62myb domain protein 19