PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_15020-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 30664.5 Da PI: 7.236 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 8.9e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d + ++G +W+t++ + g+ R +k+c++rw +yl TRIUR3_15020-P1 15 KGLWSPEEDQKLRDFIVRYGHSCWSTVPVKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 70 | 113 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ E+e l +++ lG++ W+ Ia++++ gRt++++k++w++yl TRIUR3_15020-P1 70 MFSRAEEETLMSLHATLGNK-WSQIAQHLP-GRTDNEVKNYWNSYL 113 58899***************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 10 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.964 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-27 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-10 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.63E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.783 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.26E-11 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI VRYGHSCWST VPVKAGLQRN GKSCRLRWIN 60 YLRPGLKHGM FSRAEEETLM SLHATLGNKW SQIAQHLPGR TDNEVKNYWN SYLKKRVEGA 120 RSPAKSAGSD APRSPTPSDS ARERSTVNQP SISGSSGPLE SSSMADDSSN LTVPGVVASI 180 RPHTPVLPKV MFADWLDMDM DMDYGTGLMA PSALDAAFDG SPAQQGVSHQ GGVQVDGMCG 240 AVDSLHGLGN EGICWEFDAG QIHMQGGAGF CDLLSVSEFL GIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 15 | 118 | 7 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370513 | 0.0 | AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156817.1 | 0.0 | transcription factor LAF1-like | ||||
TrEMBL | M7YXG4 | 0.0 | M7YXG4_TRIUA; Transcription factor LAF1 | ||||
STRING | TRIUR3_15020-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 3e-62 | myb domain protein 19 |