PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_15006-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 489aa MW: 54525.1 Da PI: 4.5363 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 66 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l +v+ +G g+W+ + r g++R++k+c++rw ++l TRIUR3_15006-P1 66 KGPWTSDEDQRLRTYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 113 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.9e-15 | 119 | 162 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+++++++++++G++ W++ a+ + gRt++++k++w++ TRIUR3_15006-P1 119 KGPFSKEEEQKIIELHALHGNK-WAKMASVLE-GRTDNEIKNFWNT 162 79********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.074 | 61 | 113 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-30 | 63 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 65 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 67 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.72E-11 | 68 | 113 | No hit | No description |
Pfam | PF13921 | 5.3E-16 | 69 | 129 | No hit | No description |
PROSITE profile | PS51294 | 23.782 | 114 | 168 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 118 | 166 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 121 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.08E-12 | 121 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MEGKDATLAL PELLKEEVQS PPLSPLSPRS SDDDETEADD SDGEEEEGGA PVGTSGAVVS 60 GPPMKKGPWT SDEDQRLRTY VEAHGEGNWN QVQRNAGLNR CGKSCRLRWA NHLRPNLKKG 120 PFSKEEEQKI IELHALHGNK WAKMASVLEG RTDNEIKNFW NTRTKRLQKA GLGLYPDGLL 180 SRLANQEMGS HSPDDSRGKK RQNELSQGNG LEFDDIIFEK LDYKKQSDNF LTPNFTIQDS 240 LPMNDINYPL KRHASSGIVS DYGGSPKCGQ FSNEIEEASY NDLNSEMSIV SFNNVISNSI 300 QLLDDNFPIS GKILPIKMEL PSFQYVAYDT STNLLCPSST LPEQVHGFGV PTQFEGEFDS 360 ELSFPYGYHF IPSSSIFDDN TLEYSSFNEL RTYKSPTDLD AIFMDNKHNA DILHDKYFCS 420 DPCATDVSAE ARFLNEDSTH SEYQPNNGPL NALLYGNFCN DVTLSVRDDG HQTLLSSNGV 480 PNTHHLPGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 62 | 166 | 3 | 106 | B-MYB |
1h8a_C | 2e-27 | 59 | 166 | 20 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU730900 | 3e-90 | EU730900.1 Brachypodium distachyon clone BAC DH003L20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185337.1 | 0.0 | transcription factor GAMYB-like | ||||
TrEMBL | M7YZU0 | 0.0 | M7YZU0_TRIUA; Transcription factor GAMYB | ||||
STRING | TRIUR3_15006-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12902 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26960.1 | 9e-57 | myb domain protein 81 |