PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_14330-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 28625.1 Da PI: 5.9734 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.7e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+ +++++G +W++ +r g+ R++k+c++rw +yl TRIUR3_14330-P1 16 RGSWTPQEDMRLIAYIQKHGHANWRALPRQAGLLRCGKSCRLRWINYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ ++++++lG++ W++Ia++++ gRt++++k+ w+++l TRIUR3_14330-P1 69 RGNFTAEEEATVIKLHALLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.211 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.876 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-26 | 67 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPRQAGLLR CGKSCRLRWI 60 NYLRPDLRRG NFTAEEEATV IKLHALLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKARC 120 NSAMYDQGQP GGGGKRVVVG GFGEGTRPCA GGGGGVEELL ELPDIDMDAD IWSIIDDDVA 180 RLQQGDATVP CTTKASPEEE GNEWWLADLE KELGLWGPTE ESQPQAGPHD QIGYPGQDME 240 MVMSSSYPQS RSDHEASNSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-26 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248649 | 1e-131 | AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence. | |||
GenBank | AK369689 | 1e-131 | AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572844.1 | 1e-101 | myb-related protein Zm1 | ||||
Swissprot | P20024 | 3e-76 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | M7ZWI7 | 0.0 | M7ZWI7_TRIUA; Myb-related protein Zm1 | ||||
STRING | TRIUR3_14330-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 2e-67 | myb domain protein 63 |
Publications ? help Back to Top | |||
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