PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14210-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 385aa    MW: 43030.7 Da    PI: 7.1246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14210-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.6e-50101571128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...................kvka.eekewyfFskrdkkyatgkrk 74 
                      +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+                    ++ +  ++ewyfFs++dkky+tg+r+
  TRIUR3_14210-P1  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDradklyacvvscngmadrcRIGTgPQNEWYFFSHKDKKYPTGTRT 102
                      69****************************.9***************84479999999999988887644443566****************** PP

              NAM  75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      nrat++g+Wkatg+dk+++   + + +g++ktLvfy grap+g+ktdW+mheyrl
  TRIUR3_14210-P1 103 NRATTAGFWKATGRDKAIFLGsGARRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 157
                      *******************9756778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-555177IPR003441NAC domain
PROSITE profilePS5100555.98410177IPR003441NAC domain
PfamPF023652.0E-2711157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MHPSGGALSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRAD  60
KLYACVVSCN GMADRCRIGT GPQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI  120
FLGSGARRIG MRKTLVFYVG RAPHGKKTDW IMHEYRLDED NVEVQEDGWV VCRVFTKKSY  180
TRGMNPAEMA GFDDDELLHP FPVPASAAGA MQMATDQKHI MHNPGHLMQQ QQQHYDFPSF  240
DASMQLPQLM SAEHEQQTLS SFLPGAPAAV AMRPHELECS QNLMKLTSSG TNGMLHHHGG  300
GGGGSDARFP GTDWSILDKL LASHQNLDQL FQGKVAAAAA ASMAPYQQHQ QQLMEQLGGS  360
STSSMQRMPL QYLGCEAADL LRFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-48817915167NO APICAL MERISTEM PROTEIN
1ut4_B3e-48817915167NO APICAL MERISTEM PROTEIN
1ut7_A3e-48817915167NO APICAL MERISTEM PROTEIN
1ut7_B3e-48817915167NO APICAL MERISTEM PROTEIN
4dul_A3e-48817915167NAC domain-containing protein 19
4dul_B3e-48817915167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281861e-122AB028186.1 Oryza sativa mRNA for OsNAC7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169406.10.0NAC domain-containing protein 76
SwissprotQ5Z6B61e-121NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLM7ZDH60.0M7ZDH6_TRIUA; NAC domain-containing protein 76
STRINGTRIUR3_14210-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-91NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]