PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_13805-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 36911 Da PI: 10.0664 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.5 | 6.1e-54 | 110 | 243 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v TRIUR3_13805-P1 110 LPPGFRFHPTDEELVNYYLKRKIHGLHIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRV 202 79****************************.99**************84335556888************************************ PP NAM 93 lsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + +++g+kktLv+y+grap+g++tdWvmheyrl TRIUR3_13805-P1 203 MTQqhhggGARAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 243 **8777666666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-63 | 105 | 266 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.233 | 110 | 266 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-29 | 111 | 243 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MKLARESGKE EVASKGGPHP IDENLEGRMT SVPPTPADDD RPRGRENLLI RAASRPVKAA 60 AAPSSNQQEQ RRRSKVRILL LGRSSYQPSC RSPEHADAVV DRRGMAPVGL PPGFRFHPTD 120 EELVNYYLKR KIHGLHIELD IIPEVDLYKC EPWDLAEKSF LPSRDPEWYF FGPRDRKYPN 180 GFRTNRATRA GYWKSTGKDR RVMTQQHHGG GARAIGMKKT LVYYRGRAPQ GVRTDWVMHE 240 YRLDDKDSED TIAIQDTYAL CRVFKKNAIC AERIAGSLGN RSIDAGLKNI TCKALYPVNM 300 ENPMQQDPLH AWIARHASVL TKKLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-51 | 101 | 266 | 6 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00363 | DAP | Transfer from AT3G17730 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251493 | 0.0 | AK251493.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf127o16, mRNA sequence. | |||
GenBank | AK359507 | 0.0 | AK359507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1098E06. | |||
GenBank | AK361030 | 0.0 | AK361030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130O02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612702.2 | 1e-117 | NAC domain-containing protein 86 | ||||
Swissprot | A4VCM0 | 2e-81 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | M7ZFD3 | 0.0 | M7ZFD3_TRIUA; NAC domain-containing protein 78 | ||||
STRING | TRIUR3_13805-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3713 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-108 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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