PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_13799-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 195aa MW: 21656.4 Da PI: 4.2412 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.2 | 4.4e-06 | 13 | 59 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + e E RR++i ++ L++l+P + +k Ka +L + ++Y++sLq TRIUR3_13799-P1 13 KIEDETVRREKITLKMKMLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 59 5677889******************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-13 | 6 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.087 | 8 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-13 | 14 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-6 | 14 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.64E-6 | 20 | 63 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MGEPTGPDSK KCKIEDETVR REKITLKMKM LQDLVPGCNK VIGKALMLDE IINYVQSLQQ 60 QVEFLSMKLS TVNPQLDFDT LSNLLHKDMN QALGPSASTV FPLESAGTVY PLCDQADLYQ 120 SFSSGAMENQ CSMGLLDMAL PPAPQYPFQK QQQDFWEASA QNGLHMDHEQ SQENAGSAPN 180 FDGQLQAADH PEIEF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK363517 | 0.0 | AK363517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016D23. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195706.1 | 1e-126 | transcription factor bHLH49-like isoform X1 | ||||
TrEMBL | A0A446T7H5 | 1e-142 | A0A446T7H5_TRITD; Uncharacterized protein | ||||
TrEMBL | M7YRP0 | 1e-142 | M7YRP0_TRIUA; Transcription factor bHLH49 | ||||
STRING | TRIUR3_13799-P1 | 1e-143 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68920.3 | 5e-38 | bHLH family protein |