PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIUR3_13653-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23555.1 Da PI: 6.6727 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.7 | 8.4e-25 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELSvLCda++ +iifs +gkly+ TRIUR3_13653-P1 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDADIGIIIFSAHGKLYD 56 8********************************************97 PP | |||||||
2 | K-box | 32.5 | 3.6e-12 | 91 | 162 | 18 | 88 |
K-box 18 qqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 +qe+ Lk+ei+ Lq+ +R + G+ + +++ eL+ Le+ Le + +iRs K+ +l++ e lq+k e++ TRIUR3_13653-P1 91 KQEAMVLKQEIDLLQKGLRYIYGNRANeHMNVDELNALERYLEIWMFNIRSAKEGMLKAANEILQEKIVEQH 162 89*********************998626*************************************987765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.75E-27 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.576 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.55E-39 | 2 | 77 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-23 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.593 | 87 | 191 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-12 | 90 | 157 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD ADIGIIIFSA HGKLYDLATT 60 GTMDGLIERY KSASGEGMAA DGCGDQRVDP KQEAMVLKQE IDLLQKGLRY IYGNRANEHM 120 NVDELNALER YLEIWMFNIR SAKEGMLKAA NEILQEKIVE QHGLIDVGMT IADQQNGHFS 180 TVPMLEEITN PLTILSGYST CRGSEMGYSF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 1e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 1e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 1e-16 | 1 | 70 | 1 | 69 | MEF2C |
6byy_A | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM502878 | 0.0 | AM502878.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM12 (WM12 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147398.1 | 1e-151 | MADS-box transcription factor 26 isoform X2 | ||||
Swissprot | A2YQK9 | 1e-140 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 1e-140 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | M7ZCB3 | 1e-155 | M7ZCB3_TRIUA; MADS-box transcription factor 26 | ||||
STRING | TRIUR3_13653-P1 | 1e-156 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-55 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
---|---|---|---|
|