PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_13477-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 308aa    MW: 34070.7 Da    PI: 9.5788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_13477-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.4e-114575131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     rg+WT+eEd llvd++ ++G g+W++ ar+ 
  TRIUR3_13477-P1 45 RGPWTAEEDMLLVDYISKHGEGRWNSLARCA 75
                     89**************************986 PP
2Myb_DNA-binding53.55.4e-17121164146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  TRIUR3_13477-P1 121 RGNITPEEQLLILDLHSRWGNR-WSKIAQRLP-GRTDNEVKNYWRT 164
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.82440115IPR017877Myb-like domain
SuperFamilySSF466896.1E-2842162IPR009057Homeodomain-like
SMARTSM007174.3E-1244117IPR001005SANT/Myb domain
PfamPF002493.7E-84574IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2246122IPR009057Homeodomain-like
CDDcd001673.66E-1047115No hitNo description
PROSITE profilePS5129423.354116170IPR017930Myb domain
SMARTSM007177.1E-15120168IPR001005SANT/Myb domain
PfamPF002491.9E-15121164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-23123169IPR009057Homeodomain-like
CDDcd001675.99E-12125164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDKEYYKACM GMEALPMSPA GFSAGATEAA MAVATASEDE GDLKRGPWTA EEDMLLVDYI  60
SKHGEGRWNS LARCAAHYPL RSLLMFFFAD MGLVLARVGL RRTGKSCRLR WLNYLRPDVR  120
RGNITPEEQL LILDLHSRWG NRWSKIAQRL PGRTDNEVKN YWRTRVQKHA KQLHCDVNSD  180
RFRDVVRQVW MPRLLERIQA ESSSSAAAAA AGVGVPALTR AMSSPAGASQ YHCFDHASSG  240
GPSRKVAVTM SPDTSSTLRS SLSPAETSHG AHFPAWGAAT ATANVDGSMM QWLRFQKKSN  300
SCDVGIYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-234216224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6837940.0JX683794.1 Thinopyrum intermedium R2R3 MYB transcription factor (MYB2R-1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164818.11e-170transcription factor MYB30-like
SwissprotQ10MB41e-79MYB2_ORYSJ; Transcription factor MYB2
TrEMBLT1M7G60.0T1M7G6_TRIUA; Uncharacterized protein
STRINGTRIUR3_13477-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-72myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]