PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_13169-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GATA

Protein Properties

Length: 267aa MW: 28995.2 Da PI: 4.2405

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_13169-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.9	1.2e-17	114	143	1	30
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyy 30 C+nCgt +TplWR+gp+g+k+LCnaCG+++ TRIUR3_13169-P1 114 CANCGTASTPLWRNGPRGPKSLCNACGIRF 143 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	13.297	108	141	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.2E-14	108	166	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.47E-13	110	152	No hit	No description
Gene3D	G3DSA:3.30.50.10	8.5E-16	112	145	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.27E-14	113	143	No hit	No description
PROSITE pattern	PS00344	0	114	139	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	3.1E-15	114	143	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MATSTFSLFF PPLPSSKGQW PSVEEAAYSY DDHSSVTTLS PSSPASSASS GSLVDCTLSL 60 GTPSTRRPEP DRTRHGAPPQ ACPSVSAGAE PCYYHQQQGR GGAAGHEQLL DRRCANCGTA 120 STPLWRNGPR GPKSLCNACG IRFNPFATVR DHDGGEQDLR RASDEKDVDN GGGTDNDFDV 180 EEWRRIFPDS DDDVTGPDPM DDGISRAEWL AHRRDEKDVD NGGGTDNDFD VEEWRRIFPD 240 SDDDVTGPDP MDDGISRAEW LALTKSD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250\|UniProtKB:Q6L5E5}.
UniProt	Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269\|PubMed:19337211}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00472	DAP	Transfer from AT4G36620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU722206	1e-137	GU722206.1 Hordeum vulgare subsp. vulgare cultivar Bowman third outer glume (TRD) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154840.1	2e-83	GATA transcription factor 19-like
Swissprot	B8AX51	2e-30	GAT15_ORYSI; GATA transcription factor 15
Swissprot	Q6L5E5	1e-30	GAT15_ORYSJ; GATA transcription factor 15
TrEMBL	M7ZQP6	0.0	M7ZQP6_TRIUA; GATA transcription factor 19
STRING	TRIUR3_13169-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1665	37	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36620.1	1e-21	GATA transcription factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]