PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_13070-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 339aa MW: 37967.9 Da PI: 6.9921 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.9e-15 | 14 | 84 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqk 46 +g+W++eEd l+ +++q G+g +W+ Ia+ ++ gRt++++k++w++ TRIUR3_13070-P1 14 KGPWSPEEDATLKSYIEQNGTGgnwialpqkideedriilslyisigsRWSIIAAQLP-GRTDNDIKNYWNT 84 79********************************************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.309 | 9 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-15 | 11 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.7E-8 | 12 | 44 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-13 | 13 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.50E-8 | 16 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-16 | 46 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-9 | 47 | 84 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDATLKSYIE QNGTGGNWIA LPQKIDEEDR IILSLYISIG 60 SRWSIIAAQL PGRTDNDIKN YWNTRLKKKL FGKQSRKDQR QHQFARQATN SGHKEEASEG 120 AAGNNGFAAG AYNWHQHAMA MPSRPMPGSM VEGNRIGEGV DESIRKLLFK LGGSSFAALQ 180 APPCLPPPMY GEAPNFVAPS VHTAPLNEGG IHCSGVLPAL ELDESFQFNQ VKLDGLECFF 240 GMGDQSMRWN EECDWRQLRR SAAEQVRHLG TQSEVCVLGV EELKAMDEKY RVLFDAINKQ 300 AGNSRSEVEI KEEIWTTGQG EKKKEKRAIL HHQEKWWLE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364805 | 0.0 | AK364805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156621.1 | 1e-180 | myb-related protein Myb4-like | ||||
TrEMBL | M7YWK6 | 0.0 | M7YWK6_TRIUA; Transcription factor RAX3 | ||||
STRING | TRIUR3_13070-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 6e-51 | myb domain protein 36 |