PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12807-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 353aa    MW: 38864.7 Da    PI: 8.4227
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12807-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.6e-1792145356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV  WFqNrRa++k
  TRIUR3_12807-P1  92 KKRRLNVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVALWFQNRRARWK 145
                      4568999**********************************************9 PP
2HD-ZIP_I/II124.84e-4091180190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++e
  TRIUR3_12807-P1  91 EKKRRLNVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVALWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQSE 180
                      69*************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-1974148IPR009057Homeodomain-like
PROSITE profilePS5007116.68287147IPR001356Homeobox domain
SuperFamilySSF466891.59E-1889149IPR009057Homeodomain-like
SMARTSM003893.5E-1590151IPR001356Homeobox domain
PfamPF000461.2E-1492145IPR001356Homeobox domain
CDDcd000863.66E-1492148No hitNo description
PRINTSPR000312.2E-5118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000312.2E-5127143IPR000047Helix-turn-helix motif
PfamPF021831.9E-12147180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAWRPLPPPS SLRISSSTCS KHRRSPFLPS PQCPSLQDFR GGLSPMLGKR PAMYGGGGDG  60
GCGGDEVTGG GGGGGANEEE TSDDGSQLGG EKKRRLNVEQ VRTLEKNFEV ANKLEPERKM  120
QLARALGLQP RQVALWFQNR RARWKTKQLE KDYDVLKRQF DAVKAENDAL LSHNKKLQSE  180
CLQKGCWKRR PCPRLSIYTC EIVIVELSRH SSFSERPSRI WQRPQQILGL KGCREAASEL  240
INLNKETEAS CSNRSENSSE INLDISRTPP SDGPMDAPPS HQQGGGSGGG MIPFYPSVAR  300
PSAGVDIDHL LHASVPKMEH HHGGPDTASF GNLLCGVDEP PPFWPWADHQ QFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538560.0DQ353856.1 Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188842.11e-172homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8S7W91e-118HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLM7ZDS30.0M7ZDS3_TRIUA; Homeobox-leucine zipper protein HOX21
STRINGTRIUR3_12807-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.16e-70HD-ZIP family protein