PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_12734-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Whirly | ||||||||
Protein Properties | Length: 277aa MW: 32253 Da PI: 8.7928 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 36.3 | 1e-11 | 22 | 56 | 21 | 55 |
Whirly 21 ldsgnlklkraGglllelanataerkydWekkqsf 55 sg+ k+ ++G++ll++a+a+++r+ydW +kq TRIUR3_12734-P1 22 ESSGAYKVAKEGFVLLQFAPAVGPRQYDWTRKQLP 56 359*****************************964 PP | |||||||
2 | Whirly | 116.4 | 2e-36 | 118 | 208 | 49 | 139 |
Whirly 49 WekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 ++k++f+ls+ e+++l+ l+ +sceffhdp+++ s+eGkvrk+lkveP pdG G f+nlsv+n l++++e++++P++k+e+av+ s ++ TRIUR3_12734-P1 118 SKRKDVFSLSVWEMGTLLTLGLTDSCEFFHDPFKGRSDEGKVRKVLKVEPTPDGNGRFFNLSVQNRLLNVDENIYIPITKGEYAVIVSTFN 208 5789**********************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08536 | 1.2E-10 | 21 | 59 | IPR013742 | Plant transcription factor |
Gene3D | G3DSA:2.30.31.10 | 3.7E-11 | 23 | 56 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.51E-8 | 23 | 78 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.02E-47 | 103 | 247 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.3E-33 | 119 | 205 | IPR013742 | Plant transcription factor |
Gene3D | G3DSA:2.30.31.10 | 7.5E-46 | 119 | 230 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MEVQLLSSEE NEHEQGDPPM QESSGAYKVA KEGFVLLQFA PAVGPRQYDW TRKQLPKTSV 60 YARLNSMVWF RQKEKKTYIT LKNEFRAKIY IVDVREMKFR NLLIGTIQPL PGVTKNFSKR 120 KDVFSLSVWE MGTLLTLGLT DSCEFFHDPF KGRSDEGKVR KVLKVEPTPD GNGRFFNLSV 180 QNRLLNVDEN IYIPITKGEY AVIVSTFNYI IPHIMGWSTF TNSIKPEESQ PYNRPQSSPE 240 LEWRRNGLHE TYCSNFCLEV LQYPVWIMDT CIRYPKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 1e-57 | 109 | 243 | 82 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 1e-57 | 109 | 243 | 82 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 1e-57 | 109 | 243 | 82 | 218 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 1e-57 | 109 | 243 | 82 | 218 | p24: plant transcriptional regulator PBF-2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353795 | 1e-170 | AK353795.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002M22. | |||
GenBank | AK365452 | 1e-170 | AK365452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034E15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A446X162 | 0.0 | A0A446X162_TRITD; Uncharacterized protein | ||||
TrEMBL | M8AE78 | 0.0 | M8AE78_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_12734-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.2 | 8e-62 | ssDNA-binding transcriptional regulator |