PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_12584-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 196aa MW: 20780.7 Da PI: 4.3961 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.3e-17 | 6 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e +++++++lG++ W+tIa++++ gRt++++k+ w+++l TRIUR3_12584-P1 6 RGNFTCEEEEAIIQLHAMLGNR-WSTIAARLP-GRTDNEIKNVWHTHL 51 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.821 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-14 | 4 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 5 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 6 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 7 | 52 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-11 | 8 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MAGSKRGNFT CEEEEAIIQL HAMLGNRWST IAARLPGRTD NEIKNVWHTH LKKRLESSSK 60 TSGQAAPKRK AKKPAVAATA SALEGPTSEP ASSSPGQSLS MSPEQSLSTS SATGYSMASS 120 LENTGSSSSE SEEFQIDDSF WSETLAMSVD SSGSGMETGD TFGVDSASTS SSSNDEMDFW 180 VTLFMQASDI ESLSQI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN969051 | 0.0 | JN969051.1 Triticum aestivum MYB73 (MYB73) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169006.1 | 1e-113 | myb-related protein Myb4-like | ||||
Swissprot | Q6K1S6 | 3e-53 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | M7ZKA3 | 1e-138 | M7ZKA3_TRIUA; Myb-related protein Myb4 | ||||
STRING | TRIUR3_12584-P1 | 1e-139 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 8e-29 | myb domain protein 15 |
Publications ? help Back to Top | |||
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