PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12568-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 255aa    MW: 27673.1 Da    PI: 4.7577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12568-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-1167115355
                      HHHHHH.HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahner.ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++n++ Er RR+r+N+++  +r ++P+      +K++Ka+i + Av YI +Lq
  TRIUR3_12568-P1  67 ASKNIVeERDRRRRLNEKLYAIRGVVPNI-----TKMDKASIIQDAVAYIEELQ 115
                      5555552799******************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1563131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1463129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.81865114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-966115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-1266119No hitNo description
SMARTSM003531.2E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEADMDASLD FLELEAHLVF DLGDADSSYL PAEDSLSGLD SCYNDSTGSP DGATSSRSTA  60
STRATRASKN IVEERDRRRR LNEKLYAIRG VVPNITKMDK ASIIQDAVAY IEELQEQERR  120
ILAEVSDLEA GGCTAVVVKS EASTGSEGVE DAGVGFSPPK KTRRTASSSS INDPVTSPAT  180
HPVLLELEVM PIAEKLAVVS MRHDNAQHVM AKMYKALDSL RLKVITSSVT VVDGRTVHTM  240
FIEVAIRDLL HFSSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE9962561e-117HE996256.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_12674.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186745.11e-149transcription factor bHLH35-like
TrEMBLM8A6C10.0M8A6C1_TRIUA; Transcription factor bHLH35
STRINGTRIUR3_12568-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.38e-38bHLH family protein