PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_12483-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 159aa MW: 17669.3 Da PI: 10.1733 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.8 | 6.3e-51 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yL++k+ g ++ + vi+evd+yk+ePw+Lp+k+++ + kewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+ TRIUR3_12483-P1 11 LPPGFRFHPTDEELVMYYLCRKCGGLPIAA-PVIAEVDLYKFEPWRLPEKAAGggaDAKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKP 103 79*************************999.89***************64433343667*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s + v +kk Lvfy g+ pkg+kt+W+mheyrl TRIUR3_12483-P1 104 VGS--PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 138 *99..779***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-55 | 8 | 145 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.949 | 11 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MDHGFDGALQ LPPGFRFHPT DEELVMYYLC RKCGGLPIAA PVIAEVDLYK FEPWRLPEKA 60 AGGGADAKEW YFFSPRDRKY PNGSRPNRAA GTGYWKATGA DKPVGSPRPV AIKKALVFYA 120 GKPPKGVKTN WIMHEYRLAD VDRSAAARKK SNNALRVTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-65 | 6 | 138 | 10 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357598 | 0.0 | AK357598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057F23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163238.1 | 1e-110 | NAC domain-containing protein 71-like | ||||
Swissprot | Q53NF7 | 2e-92 | NAC71_ORYSJ; NAC domain-containing protein 71 | ||||
TrEMBL | M7ZD18 | 1e-113 | M7ZD18_TRIUA; NAC domain-containing protein 71 | ||||
STRING | TRIUR3_12483-P1 | 1e-114 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11804 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 8e-80 | NAC family protein |
Publications ? help Back to Top | |||
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