PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_12421-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 421aa MW: 47201.1 Da PI: 6.245 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2.1e-18 | 126 | 172 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l TRIUR3_12421-P1 126 KGQWTLEEDRKLVKLVEQFGLRKWSQIAQMLP-GRVGKQCRERWHNHL 172 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.4e-16 | 178 | 220 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd l++ +k+ G++ W+ Ia++++ gRt++++k++w+ TRIUR3_12421-P1 178 KDTWSEEEDMVLIQTHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 220 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.601 | 121 | 176 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.61E-32 | 123 | 219 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-16 | 125 | 174 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-29 | 127 | 179 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 8.9E-20 | 129 | 186 | No hit | No description |
CDD | cd00167 | 6.37E-16 | 129 | 172 | No hit | No description |
SMART | SM00717 | 2.5E-15 | 177 | 225 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.287 | 177 | 227 | IPR017930 | Myb domain |
CDD | cd00167 | 2.12E-12 | 180 | 223 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 180 | 225 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MDFGCFQPHA GSCDDTPLDF HVQQSAHYDL HSLDRSFEPV GGSIGPFAAF YPDYYPQGAT 60 TKAVIGDASS IVHSSGPHLP LLTPKLEVSQ LIGGGLGSYK TYEMSRRFFP RKKASSKALK 120 RANVVKGQWT LEEDRKLVKL VEQFGLRKWS QIAQMLPGRV GKQCRERWHN HLRPNIKKDT 180 WSEEEDMVLI QTHKEVGNKW AEIAKRLPGR TENSIKNHWN ATKRRQFARR RTRTSAKNPK 240 SGTLLQNYIK SLGIGSSKVT AAPLAPKERP LSPSSPASPT QNLAQVSDSW SESNPSNIMV 300 SEGLFSTDDR QADSCEEILV PTCDDFSIDM CDGLFDTKED AQYPVYSIDD DVDMDYIFNH 360 MDYTIKIDHE IDMEMAWCDD ALANIESGSS PLVTVAGPAE IKTVQVKEEM NLVELVTRTE 420 T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-46 | 124 | 226 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-46 | 124 | 226 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184036.1 | 0.0 | myb-related protein Myb4-like | ||||
TrEMBL | M7ZC15 | 0.0 | M7ZC15_TRIUA; Transcription factor MYB98 | ||||
STRING | TRIUR3_12421-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-61 | myb domain protein 98 |