PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_12327-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 25537.4 Da PI: 6.2823 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00072 | 153 | 173 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C ++F+++ L H++ H TRIUR3_12327-P1 153 CVYCYRRFRTSQALGGHQNAH 173 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.89E-5 | 150 | 178 | No hit | No description |
Pfam | PF13912 | 2.6E-5 | 151 | 175 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.637 | 151 | 178 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 153 | 173 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEPAYRAIAS AIGSAPSHWH SSLHAPSTSP IGVHRSTYEH CILRDEEGTR TVLEQKDTRE 60 SNETAMERTS IRDALNINSA INWDEVDDQH DGHALNMHYM YVFEKSAICE YDTQPPGAST 120 MEQASSAQAE LSLELTLAAD VGVVPAEAGF FLCVYCYRRF RTSQALGGHQ NAHKKERAVA 180 KRRRDAAAAM RPSPARKAAA RMPEEPAGGV MAHKDGSSCR ESDPELDLSL RL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M7Z0J4 | 1e-172 | M7Z0J4_TRIUA; Zinc finger protein KNUCKLES | ||||
STRING | TRIUR3_12327-P1 | 1e-173 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |