PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_12195-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 1105aa MW: 122773 Da PI: 5.7196

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_12195-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.6	6.7e-11	619	662	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + l+ L+++Fek++yps+ ++e LA++lgLt q++ WF R TRIUR3_12195-P1 619 PFLLQKLKAYFEKEPYPSRPAKESLAQELGLTFHQITRWFSSTR 662 556899**********************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.4E-9	610	672	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.3E-12	618	672	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-10	618	666	IPR009057	Homeodomain-like
CDD	cd00086	2.07E-10	618	666	No hit	No description
Pfam	PF00046	2.5E-8	619	662	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.876	622	668	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1105 aa Download sequence Send to blast
MDRENKLQNC CKDVDVDGRY IDLKEILGAM KAPAHFYRLK KLTGSSSPTE RFYKACPKSP 60 RIGLSVPAEK ENEKVGNGSP SSPTKGKRGR KGSQIIANKK YPLRSAHSSA RVLRSTSKDK 120 SKTPNEPVSP LRSAHSSPRV LRSTPKNKSK TPKKQVNSLR SAHSSARVLS STLKKKVPNE 180 PVNDSTAAQP AARKRKRGRP SNAASPKNEC IKIRQRVRYI LNRMNYEQSF IQAYAGEGWK 240 GQSLEKIRPE KELERAKAEI LRCKLRIREA FRNMDSLLLE GKLDESLFDS EGEISSEDIF 300 CAICASKHVT LKNDIILCDG GDEGWLCPAC DCKLDCIDLL NELQGSTLAM HDSWEKVFPE 360 SISNGLNQIG ASDLPSDDSE EDYDPTLAEG DTVDENKSSA EDGDEGSDSD DLDFITSSDE 420 SEPSKKKRSE SKNKNTVNDL ALPSDDSEDD DFDPEGPNSS EDQKTKTNSD ESDFTSDSDD 480 FCAEISKSSG KDKVSAPSFS DQTNGVDIME AELEQDSVLP ASNRRQVGHL DYKKLYDEAY 540 GKETTDSSDE EEWSGHSPNE NPEDSDTDSF AGPLKPAKTR RARGGRQNNE RTPQSERHSV 600 ILVLKVYISC ILNYVIGTPF LLQKLKAYFE KEPYPSRPAK ESLAQELGLT FHQITRWFSS 660 TRHYSRVSAA KKGKRLENYT AENNDGIAAD SIQQREPNGS VLGKPNVDRN GIVSEEGMAQ 720 KNLDEGERED TPFRQHISCE QTLDGTPPAN KHNTANSRND TSRNAEDTPL GQDIGCEQTV 780 AAVNQNCTIG STNVGSPKGA PGGNKHLKNS PRSVGSPRRG SAEKNIPGLE HVDEARRKAI 840 LRELRKMKAA GRCCLGVVME LLTAATSCKA ENVIRRERQR KQHQQKATTK EVSTKGIVDV 900 EEDVSPPLSP VAPSPSILPL TRKPTFAPPA TDNDPIAEWA FSDAFTQVCD LPQFQRPLLD 960 EIEWPTKMGT TCEELKTGNK RLKKTDGSSS HQSIGLDDEE DEVVGEIGRA IMLMNNPQLI 1020 GNKENRVGEE RDVTQMGAQE GPYFWINELE KERLQLARET EDSMIMLVDA SLLDEKEKRW 1080 LEGKKETDLR RENEGLQQQM RHGWL

Sequence ? help Back to Top

Protein Sequence Length: 1105 aa Download sequence Send to blast

MDRENKLQNC CKDVDVDGRY IDLKEILGAM KAPAHFYRLK KLTGSSSPTE RFYKACPKSP  60
RIGLSVPAEK ENEKVGNGSP SSPTKGKRGR KGSQIIANKK YPLRSAHSSA RVLRSTSKDK  120
SKTPNEPVSP LRSAHSSPRV LRSTPKNKSK TPKKQVNSLR SAHSSARVLS STLKKKVPNE  180
PVNDSTAAQP AARKRKRGRP SNAASPKNEC IKIRQRVRYI LNRMNYEQSF IQAYAGEGWK  240
GQSLEKIRPE KELERAKAEI LRCKLRIREA FRNMDSLLLE GKLDESLFDS EGEISSEDIF  300
CAICASKHVT LKNDIILCDG GDEGWLCPAC DCKLDCIDLL NELQGSTLAM HDSWEKVFPE  360
SISNGLNQIG ASDLPSDDSE EDYDPTLAEG DTVDENKSSA EDGDEGSDSD DLDFITSSDE  420
SEPSKKKRSE SKNKNTVNDL ALPSDDSEDD DFDPEGPNSS EDQKTKTNSD ESDFTSDSDD  480
FCAEISKSSG KDKVSAPSFS DQTNGVDIME AELEQDSVLP ASNRRQVGHL DYKKLYDEAY  540
GKETTDSSDE EEWSGHSPNE NPEDSDTDSF AGPLKPAKTR RARGGRQNNE RTPQSERHSV  600
ILVLKVYISC ILNYVIGTPF LLQKLKAYFE KEPYPSRPAK ESLAQELGLT FHQITRWFSS  660
TRHYSRVSAA KKGKRLENYT AENNDGIAAD SIQQREPNGS VLGKPNVDRN GIVSEEGMAQ  720
KNLDEGERED TPFRQHISCE QTLDGTPPAN KHNTANSRND TSRNAEDTPL GQDIGCEQTV  780
AAVNQNCTIG STNVGSPKGA PGGNKHLKNS PRSVGSPRRG SAEKNIPGLE HVDEARRKAI  840
LRELRKMKAA GRCCLGVVME LLTAATSCKA ENVIRRERQR KQHQQKATTK EVSTKGIVDV  900
EEDVSPPLSP VAPSPSILPL TRKPTFAPPA TDNDPIAEWA FSDAFTQVCD LPQFQRPLLD  960
EIEWPTKMGT TCEELKTGNK RLKKTDGSSS HQSIGLDDEE DEVVGEIGRA IMLMNNPQLI  1020
GNKENRVGEE RDVTQMGAQE GPYFWINELE KERLQLARET EDSMIMLVDA SLLDEKEKRW  1080
LEGKKETDLR RENEGLQQQM RHGWL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	195	KKKVPNEPVNDSTAAQPAARKRK
2	191	197	ARKRKRG
3	874	881	RRERQRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251701	0.0	AK251701.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf120a17, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179245.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179246.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179247.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179248.1	0.0	homeobox protein HAZ1-like
Refseq	XP_020179249.1	0.0	homeobox protein HAZ1-like
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	M7ZT73	0.0	M7ZT73_TRIUA; Homeobox protein HOX1A
STRING	TRIUR3_12195-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-61	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]