PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_11978-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 784aa MW: 86145.7 Da PI: 7.9056

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_11978-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.7	2.3e-28	511	561	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl +l++yF++++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rkik++ TRIUR3_11978-P1 511 EKTVSLPVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGINRWPSRKIKKV 561 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	500	581	IPR003035	RWP-RK domain
Pfam	PF02042	8.9E-25	514	561	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MSSEGDLDLL EQLLSGDNAW LEVAPNTSRS PNFFASPSTF LSDATATTTT TPAGANSTLW 60 IPPASSTVRQ RFEQALDYIK QMQRDAGMLV QLWVPQKNCD GKLVLTTSGQ PFTLDNTSDR 120 LMQFRDVSTH YHFSADVGSE ASPVGLPGRV FIGKLPEWSP DVRLFTSYEY PRVKYAQDLD 180 VHGTMGLPVF EKGSYSCLGV MELIMTRQKL NFTSEINDIC RALQAVNLRS TEVSSTPRAT 240 KFNSASYKDA LPEILEVLRA ACVTHNLPLA QTWVTCAQQG KGGSRHTDEN YPYCISTIDT 300 ACYVNDPQMQ NFHDSCSDHH LLRGQGVAGK AFETNQPCFL PDIGSSAKEH YPLSHHAKIF 360 NLKGAVAIRL RCTRTGTADF VLEFFLPTNC EALEEQKAVL DSLSGTMRSA CRTLRVVTDK 420 EIGDEEMLEV NELNSFGPQG KNKVEELSFG NQATEHREEA SWTSLARTSK ESDLAELSMH 480 GMLSPVGQGL SPAGAQTSAQ GSKGKRRTKT EKTVSLPVLR QYFAGSLKDA ARSLGVCPTT 540 LKRICRQHGI NRWPSRKIKK VDHSLRKLQQ IIDSVHGGET AFQLNTLYKD LTNTSVSSDN 600 NLSGSVTVPP HKQSNLTDFE GHRHHRLSSN VPSTSHSHSS CSQSSDSSPS SCSGGSTKHP 660 PQAGVDLLMS GNPVNHSPVQ TLQTENASTR GHFPVQEAPD LLHNLNQQAL GGQHSSRSPS 720 PPKQNADAGW ISLNKVKPKW CCLYFREKAD HVYNAKRTVG IHVYLHGSKN ISIGMKGRTY 780 QDHC

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MSSEGDLDLL EQLLSGDNAW LEVAPNTSRS PNFFASPSTF LSDATATTTT TPAGANSTLW  60
IPPASSTVRQ RFEQALDYIK QMQRDAGMLV QLWVPQKNCD GKLVLTTSGQ PFTLDNTSDR  120
LMQFRDVSTH YHFSADVGSE ASPVGLPGRV FIGKLPEWSP DVRLFTSYEY PRVKYAQDLD  180
VHGTMGLPVF EKGSYSCLGV MELIMTRQKL NFTSEINDIC RALQAVNLRS TEVSSTPRAT  240
KFNSASYKDA LPEILEVLRA ACVTHNLPLA QTWVTCAQQG KGGSRHTDEN YPYCISTIDT  300
ACYVNDPQMQ NFHDSCSDHH LLRGQGVAGK AFETNQPCFL PDIGSSAKEH YPLSHHAKIF  360
NLKGAVAIRL RCTRTGTADF VLEFFLPTNC EALEEQKAVL DSLSGTMRSA CRTLRVVTDK  420
EIGDEEMLEV NELNSFGPQG KNKVEELSFG NQATEHREEA SWTSLARTSK ESDLAELSMH  480
GMLSPVGQGL SPAGAQTSAQ GSKGKRRTKT EKTVSLPVLR QYFAGSLKDA ARSLGVCPTT  540
LKRICRQHGI NRWPSRKIKK VDHSLRKLQQ IIDSVHGGET AFQLNTLYKD LTNTSVSSDN  600
NLSGSVTVPP HKQSNLTDFE GHRHHRLSSN VPSTSHSHSS CSQSSDSSPS SCSGGSTKHP  660
PQAGVDLLMS GNPVNHSPVQ TLQTENASTR GHFPVQEAPD LLHNLNQQAL GGQHSSRSPS  720
PPKQNADAGW ISLNKVKPKW CCLYFREKAD HVYNAKRTVG IHVYLHGSKN ISIGMKGRTY  780
QDHC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358600	0.0	AK358600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1079K24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196253.1	0.0	protein NLP1-like isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	M7ZYP5	0.0	M7ZYP5_TRIUA; Uncharacterized protein
STRING	TRIUR3_11978-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]