PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_11943-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ERF

Protein Properties

Length: 616aa MW: 66863.2 Da PI: 8.8205

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_11943-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.3	9.3e-09	9	54	1	52
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 s+y+GVr ++ +g + +eIr r lg+f ta eAa+a++ a+ + TRIUR3_11943-P1 9 SRYRGVRERP-SGAFYVEIRS------GdVRLGLGTFETAHEAARAYDVAAWR 54 79***888.7*****......44*****************99855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.11E-12	9	66	IPR016177	DNA-binding domain
SMART	SM00380	5.1E-14	10	71	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-18	10	66	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.609	10	65	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-5	11	22	IPR001471	AP2/ERF domain
CDD	cd00018	3.30E-16	14	67	No hit	No description
PRINTS	PR00367	4.7E-5	31	47	IPR001471	AP2/ERF domain
CDD	cd13132	4.35E-131	179	582	No hit	No description
TIGRFAMs	TIGR00797	3.7E-62	179	553	IPR002528	Multi antimicrobial extrusion protein
Pfam	PF01554	3.1E-23	179	316	IPR002528	Multi antimicrobial extrusion protein
Pfam	PF01554	2.6E-26	378	539	IPR002528	Multi antimicrobial extrusion protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006855	Biological Process	drug transmembrane transport
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0015238	Molecular Function	drug transmembrane transporter activity
GO:0015297	Molecular Function	antiporter activity

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MPPRRRGSSR YRGVRERPSG AFYVEIRSGD VRLGLGTFET AHEAARAYDV AAWRLQRPRT 60 QMNFHDVFTR EQAQDVAPPP RQDREEYRRR QRRLLIAEDE RAMAEWRWRY PQDVVHENAF 120 WAERTTRRHA ERADRRRRNA LAEAQCDLVN AGGGRFSTQT ILVGKTSTPP PPPSPARHGN 180 LQLSAAAVGL SVVSNFSFGF LLGMGSALET LCGQAYGAGQ LGALGVYMQR SWIILAVSAV 240 LLSPLYVFAP PILRALGQDD AIAGAAGDFT LRILPQMFSL ALTFPTQKFL QAQSKVMVLA 300 WISLAALAAH VAMLYLFMSR LGWGLAGAAA AYDVTSWGIA VAQVVYVVRW CGDGGGWDGL 360 SWKAFEGLWA FAKLSLASAV MLCLEVWYMM VLVVLTGHLD DAEIAVGSVS ICMNLNGWEA 420 MLFIGLNAAI SVRVSNELGS GRPRAAKHAV ASVIAQSLLI GLLAMALILA YRNSFAALFT 480 GDRAMQAAVG KVAYLLAVTM VLNSVQPVIS GVAIGGGWQA LVAYINLGCY YAFGLPLGFC 540 LGYLLRLGPQ GIWAGMLCGT ALQTAVLLAV IWNTDWEDEA AQANERISAW AGESKQLVQG 600 DAGAGDDGDL KEAFRV

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MPPRRRGSSR YRGVRERPSG AFYVEIRSGD VRLGLGTFET AHEAARAYDV AAWRLQRPRT  60
QMNFHDVFTR EQAQDVAPPP RQDREEYRRR QRRLLIAEDE RAMAEWRWRY PQDVVHENAF  120
WAERTTRRHA ERADRRRRNA LAEAQCDLVN AGGGRFSTQT ILVGKTSTPP PPPSPARHGN  180
LQLSAAAVGL SVVSNFSFGF LLGMGSALET LCGQAYGAGQ LGALGVYMQR SWIILAVSAV  240
LLSPLYVFAP PILRALGQDD AIAGAAGDFT LRILPQMFSL ALTFPTQKFL QAQSKVMVLA  300
WISLAALAAH VAMLYLFMSR LGWGLAGAAA AYDVTSWGIA VAQVVYVVRW CGDGGGWDGL  360
SWKAFEGLWA FAKLSLASAV MLCLEVWYMM VLVVLTGHLD DAEIAVGSVS ICMNLNGWEA  420
MLFIGLNAAI SVRVSNELGS GRPRAAKHAV ASVIAQSLLI GLLAMALILA YRNSFAALFT  480
GDRAMQAAVG KVAYLLAVTM VLNSVQPVIS GVAIGGGWQA LVAYINLGCY YAFGLPLGFC  540
LGYLLRLGPQ GIWAGMLCGT ALQTAVLLAV IWNTDWEDEA AQANERISAW AGESKQLVQG  600
DAGAGDDGDL KEAFRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5y50_A	6e-63	179	587	43	451	Protein DETOXIFICATION 14
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	92	RQDREEYRRRQRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359641	0.0	AK359641.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1100F18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176309.1	0.0	protein DETOXIFICATION 35-like
Swissprot	F4JH46	0.0	DTX34_ARATH; Protein DETOXIFICATION 34
TrEMBL	M7ZIB0	0.0	M7ZIB0_TRIUA; Protein DETOXIFICATION
STRING	TRIUR3_11943-P1	0.0	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47520.1	3e-09	ERF family protein

Publications ? help Back to Top
Li L,He Z,Pandey GK,Tsuchiya T,Luan S Functional cloning and characterization of a plant efflux carrier for multidrug and heavy metal detoxification. J. Biol. Chem., 2002. 277(7): p. 5360-8 [PMID:11739388] Hvorup RN, et al. The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily. Eur. J. Biochem., 2003. 270(5): p. 799-813 [PMID:12603313] Jakobsen MK, et al. Pollen development and fertilization in Arabidopsis is dependent on the MALE GAMETOGENESIS IMPAIRED ANTHERS gene encoding a type V P-type ATPase. Genes Dev., 2005. 19(22): p. 2757-69 [PMID:16291648] Bock KW, et al. Integrating membrane transport with male gametophyte development and function through transcriptomics. Plant Physiol., 2006. 140(4): p. 1151-68 [PMID:16607029]