PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11943-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 616aa    MW: 66863.2 Da    PI: 8.8205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11943-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.39.3e-09954152
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52
                     s+y+GVr ++ +g + +eIr          r  lg+f ta eAa+a++ a+ +
  TRIUR3_11943-P1  9 SRYRGVRERP-SGAFYVEIRS------GdVRLGLGTFETAHEAARAYDVAAWR 54
                     79*****888.7*********......44*******************99855 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-12966IPR016177DNA-binding domain
SMARTSM003805.1E-141071IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-181066IPR001471AP2/ERF domain
PROSITE profilePS5103217.6091065IPR001471AP2/ERF domain
PRINTSPR003674.7E-51122IPR001471AP2/ERF domain
CDDcd000183.30E-161467No hitNo description
PRINTSPR003674.7E-53147IPR001471AP2/ERF domain
CDDcd131324.35E-131179582No hitNo description
TIGRFAMsTIGR007973.7E-62179553IPR002528Multi antimicrobial extrusion protein
PfamPF015543.1E-23179316IPR002528Multi antimicrobial extrusion protein
PfamPF015542.6E-26378539IPR002528Multi antimicrobial extrusion protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006855Biological Processdrug transmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MPPRRRGSSR YRGVRERPSG AFYVEIRSGD VRLGLGTFET AHEAARAYDV AAWRLQRPRT  60
QMNFHDVFTR EQAQDVAPPP RQDREEYRRR QRRLLIAEDE RAMAEWRWRY PQDVVHENAF  120
WAERTTRRHA ERADRRRRNA LAEAQCDLVN AGGGRFSTQT ILVGKTSTPP PPPSPARHGN  180
LQLSAAAVGL SVVSNFSFGF LLGMGSALET LCGQAYGAGQ LGALGVYMQR SWIILAVSAV  240
LLSPLYVFAP PILRALGQDD AIAGAAGDFT LRILPQMFSL ALTFPTQKFL QAQSKVMVLA  300
WISLAALAAH VAMLYLFMSR LGWGLAGAAA AYDVTSWGIA VAQVVYVVRW CGDGGGWDGL  360
SWKAFEGLWA FAKLSLASAV MLCLEVWYMM VLVVLTGHLD DAEIAVGSVS ICMNLNGWEA  420
MLFIGLNAAI SVRVSNELGS GRPRAAKHAV ASVIAQSLLI GLLAMALILA YRNSFAALFT  480
GDRAMQAAVG KVAYLLAVTM VLNSVQPVIS GVAIGGGWQA LVAYINLGCY YAFGLPLGFC  540
LGYLLRLGPQ GIWAGMLCGT ALQTAVLLAV IWNTDWEDEA AQANERISAW AGESKQLVQG  600
DAGAGDDGDL KEAFRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y50_A6e-6317958743451Protein DETOXIFICATION 14
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18092RQDREEYRRRQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3596410.0AK359641.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1100F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176309.10.0protein DETOXIFICATION 35-like
SwissprotF4JH460.0DTX34_ARATH; Protein DETOXIFICATION 34
TrEMBLM7ZIB00.0M7ZIB0_TRIUA; Protein DETOXIFICATION
STRINGTRIUR3_11943-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-09ERF family protein
Publications ? help Back to Top
  1. Li L,He Z,Pandey GK,Tsuchiya T,Luan S
    Functional cloning and characterization of a plant efflux carrier for multidrug and heavy metal detoxification.
    J. Biol. Chem., 2002. 277(7): p. 5360-8
    [PMID:11739388]
  2. Hvorup RN, et al.
    The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily.
    Eur. J. Biochem., 2003. 270(5): p. 799-813
    [PMID:12603313]
  3. Jakobsen MK, et al.
    Pollen development and fertilization in Arabidopsis is dependent on the MALE GAMETOGENESIS IMPAIRED ANTHERS gene encoding a type V P-type ATPase.
    Genes Dev., 2005. 19(22): p. 2757-69
    [PMID:16291648]
  4. Bock KW, et al.
    Integrating membrane transport with male gametophyte development and function through transcriptomics.
    Plant Physiol., 2006. 140(4): p. 1151-68
    [PMID:16607029]