PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_11841-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 185aa MW: 19761.6 Da PI: 9.3076 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.7 | 2.3e-44 | 25 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C+++Cv+apyfp+ +p++fa vhk+FGasn++kll+++p e+r da+sslvyeA+ar+rdP+yG+vg i++lq+q+e+l+++l TRIUR3_11841-P1 25 PCAACKLLRRRCSPGCVFAPYFPSGEPHRFASVHKVFGASNISKLLQEIPAEHRGDAVSSLVYEANARVRDPIYGCVGAITSLQRQVESLQTQL 118 7********************************************************************************************* PP DUF260 95 allkee 100 al+++e TRIUR3_11841-P1 119 ALAQAE 124 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.351 | 24 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-43 | 25 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MGSKAIKKKR RGMKEVVAAG AGVSPCAACK LLRRRCSPGC VFAPYFPSGE PHRFASVHKV 60 FGASNISKLL QEIPAEHRGD AVSSLVYEAN ARVRDPIYGC VGAITSLQRQ VESLQTQLAL 120 AQAEIVRLRM ANAYGAAHHN GGGSTASGSP SSMSSPTKTA DHHDMAVDQS GVMELELECS 180 RFWAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-50 | 20 | 127 | 7 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-50 | 20 | 127 | 7 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 10 | KKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181605.1 | 2e-88 | LOB domain-containing protein 4-like | ||||
Swissprot | Q8LBW3 | 6e-56 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | M8A3H6 | 1e-134 | M8A3H6_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_11841-P1 | 1e-135 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 6e-57 | LBD family protein |
Publications ? help Back to Top | |||
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