PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11697-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 375aa    MW: 40622.4 Da    PI: 8.1264
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11697-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.72.8e-124876735
             GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     t TplWR+gp  ++ LCnaCG ++r +g+
  TRIUR3_11697-P1 48 TGTPLWRNGPPDKPVLCNACGSRWRIRGT 76
                     78********55555**********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.4E-44290IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.5634395IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-64881No hitNo description
PfamPF003204.3E-104876IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-84876IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.72E-950110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAKKEGPCGH CGVTNLCFDS ACCLLDERFS GTSFVLYFLL LMANAADTGT PLWRNGPPDK  60
PVLCNACGSR WRIRGTLVNY TPAHRREDTG ASEARPDKLK LKGQKQPKKR PNRNIVKDEP  120
WSDQNFWKMG NADTSNRSGS GSAVSYSESC APYGSIDASE IAGSASFIAH SEIKGASNSN  180
AASEKLKWSP MQTHDSARRD ELHCSNQHIL ESADSALVSV ALEDNCSKEV GGLTKSSMRS  240
LERPYESQSQ SFTDAEVRGG AMRIASSRSR AMASSCQLTR RAFLPKSGNA TGASLNLFML  300
APDKLSSMLN PSDKDSDQDS LLLEVPRNAR HPEAELLLCC PPPSQLSSVT VTAASPPSNH  360
SPGSVSDQLR NRHQW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768371e-162AK376837.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137I18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175110.11e-112GATA transcription factor 26-like isoform X1
RefseqXP_020175118.11e-112GATA transcription factor 26-like isoform X1
TrEMBLM7ZZP80.0M7ZZP8_TRIUA; GATA transcription factor 26
STRINGTRIUR3_11697-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.13e-21GATA transcription factor 26