PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11471-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 394aa    MW: 41825.7 Da    PI: 4.6283
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11471-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.13.1e-101149341
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     ie  + r  t ++R +g+ KKA+EL +LC++ va++  +
  TRIUR3_11471-P1 11 IEKARARAETHARRTKGLQKKASELATLCAVPVALVCSA 49
                     788899999**************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.83152IPR002100Transcription factor, MADS-box
CDDcd002661.26E-14279No hitNo description
SuperFamilySSF554554.97E-15384IPR002100Transcription factor, MADS-box
PfamPF003193.9E-101149IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MARRKVPMRL IEKARARAET HARRTKGLQK KASELATLCA VPVALVCSAG AGAPPLVWES  60
EEGVLERYRR AVPAEARARH TQRSYMETEL GKEKAKLARA RHGCPGALAD WDAALTSMTL  120
EEARGLLETI DAALRATGDR MEALGKTRTH GGGAADMVVG TAPERLLIAE VFEDMVGLVG  180
GDLEIRHPAA DGGVGAALGV GRAASAVAID AKPDESSLRR GEERGGGAGQ RKGEGTRSAG  240
VDEMLAPDFV NADYNYSAGV DDMLTLGLAN ADYNYSAGGD KMLAPGFPNA DYNYSSGGEM  300
LAPGFGNADY DWTDLTMWAT DELCDAAMPL GYPDLADGTL PPDYSAQVVT GRDYVNTPPS  360
GGYGYPMAMG VGDNFTDFDS NRTADWQFQR FDTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743771e-158AK374377.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3063B17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196824.11e-178uncharacterized protein LOC109782612
TrEMBLT1M2080.0T1M208_TRIUA; Uncharacterized protein
STRINGTRIUR3_11471-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960