PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11453-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 96aa    MW: 10780.3 Da    PI: 9.0939
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11453-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081054445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT+   +l+ +a + +  +   +W+ Iar +g g+++ +++ ++ 
  TRIUR3_11453-P1 10 WTPMQNKLFEQALAVHDRDtpdRWHNIARAVGGGKSADDVRRYYE 54
                     *****************99************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.1E-7659IPR001005SANT/Myb domain
SuperFamilySSF466896.44E-11964IPR009057Homeodomain-like
PfamPF002494.5E-6954IPR001005SANT/Myb domain
CDDcd001671.54E-61057No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASLSMSAVW TPMQNKLFEQ ALAVHDRDTP DRWHNIARAV GGGKSADDVR RYYELLVHDI  60
ARIEAGKVPF PAYRPPCPGP GHNASYEADR LKHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-26196192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519251e-138JF951925.1 Aegilops speltoides clone TaMYB42 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154620.15e-65protein RADIALIS-like 3
SwissprotQ1A1734e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM8B3P78e-66M8B3P7_TRIUA; DnaJ homolog subfamily C member 2
STRINGTRIUR3_11453-P11e-66(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-31RAD-like 6