PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11264-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 486aa    MW: 52853.3 Da    PI: 7.6482
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11264-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.8e-145998242
              TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                     +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C Nk e+
  TRIUR3_11264-P1 59 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNKVEN 98
                     689*************************.********9875 PP
2TCR50.44.5e-16141180140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  TRIUR3_11264-P1 141 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 180
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.8E-135898IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.4959181IPR005172CRC domain
PfamPF036381.2E-106095IPR005172CRC domain
SMARTSM011146.0E-19141182IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12144179IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEPEQQHNAQ PPAPPAAAPP QPPQPRPVAP MMHSARSWPL SFTPIKPLVE IKSVTPPKRK  60
KQCNCKNSHC LKLYCECFAA GLYCDGCNCK QCGNKVENEH ARQEAINSTK LRNPKAFQPK  120
IENVPSALSV RKDAGAPSVP KHNKGCHCKK SGCLKKYCEC FQANILCSKN CKCMDCKNFE  180
GSEELQAIIQ GDNASDKNNI QQAANVTLNG AIGSSGYKYS PVRRKRHPED PLGPEANHLD  240
ASQVASSSGL EGCIGYQSRS KMVYRSPLAN TIHPTDVNDL ANHLVIVCRK ATETFLTIAD  300
NKVEMEVERG IYTNADLNND KMKNREVQNG GVSQPDVATH IDQRTAGDLE SPCNNTQEDY  360
RPASPGTQAL LCDEQGTTFG SDYRTSFPSA FHDQDTPELS ALQEKTVLTG FRDYLRLLIT  420
RGKINANNSA GMTEANASSE PAMELDARRN HGATTGPGAS SFPPEAVERP KAPGDPENPR  480
AGDPSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-266019011132Protein lin-54 homolog
5fd3_B1e-266019011132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150693.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLM7ZEN20.0M7ZEN2_TRIUA; Uncharacterized protein
STRINGTRIUR3_11264-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-87Tesmin/TSO1-like CXC domain-containing protein