PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11236-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 287aa    MW: 31017.7 Da    PI: 7.9972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11236-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.4e-101942691690
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                      l +p +f   h + ++   + +l    g sW v l++   + ++ r+ l+ GW++F  +n+L++g+++ F+   g+ ++
  TRIUR3_11236-P1 194 LNVPMEFGIVHRYTEK---KKVLLRMGGDSWAVSLKHgltSTGRPRTSLRYGWQQFRVDNRLRVGETCFFRALpGDGGG 269
                      6788888888876643...345666799*******9987655555699***********************44355444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-14193282IPR015300DNA-binding pseudobarrel domain
CDDcd100174.62E-9193280No hitNo description
SuperFamilySSF1019361.08E-10193278IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.123194279IPR003340B3 DNA binding domain
PfamPF023624.1E-8194268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAAGDVATVF LEMSLGTRLA VSFPASSTTV ADLKRRVSHE HAACFPHLGQ IAVQSIKIEH  60
GGSWFHLADS MAVRDAFLFQ GINERWHLQV DASLQVDQGM VTQGHSGGAD SANHSAPAPG  120
RGHGCEGSSS RRCRKTSSSD EMLPDQVEAE AQAQVTPSER EQPLTGKGEG SSDGQNKTES  180
RGHGGEGCGR GPMLNVPMEF GIVHRYTEKK KVLLRMGGDS WAVSLKHGLT STGRPRTSLR  240
YGWQQFRVDN RLRVGETCFF RALPGDGGGD HHVLKVEVRR LDGSYAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3760081e-174AK376008.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3112F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188665.11e-163uncharacterized protein LOC109774366
TrEMBLT1M1D60.0T1M1D6_TRIUA; Uncharacterized protein
STRINGTRIUR3_11236-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264