PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11141-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 588aa    MW: 65188.8 Da    PI: 8.8895
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11141-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.8e-14150187240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+C+Ck+skClkkYCeCfa+g++C++ C+C++C N+ 
  TRIUR3_11141-P1 150 RRKQCKCKNSKCLKKYCECFASGRYCND-CNCKNCYNNV 187
                      579*************************.********96 PP
2TCR48.51.7e-15235275141
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      k++kgC+Ck+s+ClkkYCeCf ++  Cse+CkC dCkN e+
  TRIUR3_11141-P1 235 KHTKGCHCKRSECLKKYCECFRSNILCSENCKCMDCKNYES 275
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.7E-13149189IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.552150275IPR005172CRC domain
PfamPF036385.1E-10152186IPR005172CRC domain
SMARTSM011145.2E-18235276IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.7E-12238273IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MDNPLNLPPG SVQPNFGSAF YARKPGSAAT AVSLSQALPL WPPVPWPTLM VRKHHMPFPA  60
QPAAKKLQVR RSPVLSQDLP LREALQVAEL PPPRVQLRPL QQAPPVLKQS LPKTEVPVVL  120
PMRATSVDVR WNARYPWSET SCESTDRTSR RKQCKCKNSK CLKKYCECFA SGRYCNDCNC  180
KNCYNNVGHE AARQDAIDAA MERNPMAFMP KIGNIPPHAA QNCEFKVAEG PLVGKHTKGC  240
HCKRSECLKK YCECFRSNIL CSENCKCMDC KNYESNEDRK AIRRITRHQQ HLVYAHHMQN  300
PAIMGITGPY AALSPAAEKL SNLSVASSGR DQLISNNDSS QVTSSLLTPV PIEGTKSAVK  360
VEPHGVTYRP LLADVIQIEN VNELCKVLLL VSRQAAGASV GVKENINRRK LDRADSCLSS  420
INHDTEAVEK QRDEQVCLTE NSLTAVPVSE VRAGTPRSDP TDTCKYDRRP VSPETQELMC  480
NEQDRLFLTP SVAAVIPSAT KQRLPDTYKE QEKRILKTLH DYLGELVNCG RLHEEKLSLM  540
SSKFLHERTS VGSSCGSLSI SRVTEVARVG QTIRQSLHSP ASVKSPGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-261432862134Protein lin-54 homolog
5fd3_B9e-261432862134Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721950.0AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198634.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLM7ZC030.0M7ZC03_TRIUA; Uncharacterized protein
STRINGTRIUR3_11141-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.19e-74Tesmin/TSO1-like CXC domain-containing protein