PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11107-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 329aa    MW: 35040.6 Da    PI: 4.3687
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11107-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.8e-17246282135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cgt    Tp++Rrgp+g++tLCnaCGl+++ kg+
  TRIUR3_11107-P1 246 CHHCGTNAhnTPMMRRGPEGPRTLCNACGLMWANKGM 282
                      ******9999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.79104139IPR010399Tify domain
SMARTSM009793.2E-11104139IPR010399Tify domain
PfamPF062001.4E-12108138IPR010399Tify domain
PROSITE profilePS5101713.334171213IPR010402CCT domain
PfamPF062031.0E-15171213IPR010402CCT domain
SMARTSM004015.1E-13240293IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.249240297IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.56E-12244296No hitNo description
CDDcd002023.69E-15245292No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15245287IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440246273IPR000679Zinc finger, GATA-type
PfamPF003203.1E-14246281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
PLAAVAAEAE ALNASIAAVA AEAEAMNAYE HAQEQEMEEE EEEEEEEEEE EMEEDDDDGE  60
GDGQHGGNGE SVPIDAEAAA QAAAAAAAGA PLDPHGAMVS AIVPPTTGNQ LTLSFQGEVY  120
VFDSVSPDKV QAVLLLLGGR ELNPGMGAGA SSSTPYKVEF TMIQRLNFPH RVASLMRFRE  180
KRKERNFDKK IRYTVRKEVA LRMQRNRGQF TSSKPKPDDG TSELATADGS PNWGSVEGRP  240
PSAASCHHCG TNAHNTPMMR RGPEGPRTLC NACGLMWANK GMLRDLSKST PPSLQMVSTG  300
PNDSNGNAAI VPFAEQQNPA PATDANGHD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631600.0AK363160.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192766.10.0GATA transcription factor 20-like isoform X2
SwissprotQ5Z4U51e-133GAT20_ORYSJ; GATA transcription factor 20
TrEMBLT1M1150.0T1M115_TRIUA; Uncharacterized protein
STRINGTRIUR3_11107-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-74ZIM-LIKE 2