PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_11068-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 24477.2 Da PI: 9.5072 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.6e-18 | 44 | 88 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Ed+l+v+++ +lG++ W++Ia++++ gRt++++k++w+++ TRIUR3_11068-P1 44 RGNFTRDEDDLIVKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 88 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-4 | 5 | 28 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.03 | 9 | 34 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.29E-21 | 28 | 94 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 29 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.15 | 39 | 93 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-17 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 44 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-12 | 46 | 89 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 51 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTRE EDERLVAHSC RLRWINYLRP DLKRGNFTRD EDDLIVKLHS 60 LLGNKWSLIA ARLPGRTDNE IKNYWNTHIR RKLLGRGIDP VTHRPLTHAA SATTVSFLHP 120 AEPPKTQPAT EESKPPRCPD LNLDLCISLP FQQEEERPPA RACAKPVKME QLQQGGGGLC 180 FRCSILRVRG AATECSCGSN FLGLRAGMLD FRGLRMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-22 | 13 | 93 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358405 | 0.0 | AK358405.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075P05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163624.1 | 1e-137 | myb-related protein Zm38-like | ||||
Swissprot | P20025 | 9e-90 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | A0A446XEQ6 | 1e-159 | A0A446XEQ6_TRITD; Uncharacterized protein | ||||
TrEMBL | M7ZPI1 | 1e-159 | M7ZPI1_TRIUA; Myb-related protein Zm38 | ||||
STRING | TRIUR3_11068-P1 | 1e-160 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-70 | myb domain protein 4 |
Publications ? help Back to Top | |||
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