PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_11046-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 638aa MW: 71454.8 Da PI: 7.4834

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_11046-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	332.2	9.8e-102	263	635	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL++cAeav+++d ++a lL+++++++ p+gd+ qRla yf+e+L+arla+++ ++y+++++ + + +++e +++++l ++ +lk+s TRIUR3_11046-P1 263 ETLLIRCAEAVATNDRSNAGDLLKKIKQHSLPTGDARQRLAYYFAEGLEARLAGTGRQIYHSITAANHT--STVELFKSYHLCIAACCFLKVSL 354 789********************************************************99887776..599999************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 N+ I++av+g +++Hi+ ++++ G+QWp Ll+ La+R++gpp++RiTg+ sp++g ++ +et++rL+ A+++gvpf+f++ + +le TRIUR3_11046-P1 355 NFSNKNIYNAVAGRKKLHIVHYGVNDGFQWPDLLRWLADREGGPPEVRITGIISPQPGpcPVKQAKETKRRLSYCARQFGVPFKFHA-IIAKLE 447 *******************************************************99**********************.6999 PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvs..leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +++ e+L+++p+E+l+Vn +++ +l+des++ +e++rd vL+++++++P +++++ + ++s+ F++rf +al+ ++a fd++e+++ +++ TRIUR3_11046-P1 448 TVHAEDLDIDPDEVLVVNNMFHFRTLMDESLTfdMENPRDLVLNTIRKMKPSMLIHAAVNGAYSSAFFMTRFRQALNNFTAQFDMMESTMMQNK 541 ***************************98622677***************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++r vEr++++r+++n++aceg +r+er +++++W++r ++aG+++++l+ +++k k ++k + + ++++e++ +l+lgWk+r L+++S W TRIUR3_11046-P1 542 DKRLLVERHIFARSVMNIIACEGPDRVERPQNYKEWHARNQRAGLRQLSLDPDIVKMLKDQVKKQYHKHFMIDEDQRWLLLGWKGRVLYALSTW 635 **************************************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.191	236	616	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-99	263	635	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence Send to blast
MPAMAPAREE PLGLVKPAPP PPPPSFFLDQ PSITNGGSQS QQPQDDLALA YISRMLMEED 60 ITDKFFYQHP EHPTLLQAEQ PFAEILSASG IATAGAHGSS ALLPSQGNNT GIMASAFLSS 120 EIHSPPLFLN GTVTAEAPRS GVTMGDLSSM AFFKGMEEAN SFLPTVNVMV DARGRKKRSG 180 MDSETEACMG RSSKQIAVRV LAHNDSEEEE TALELDLLIL NGYDMYSNET MKERGGQAAH 240 QSICRKAPCV RHSARQMVVA DLETLLIRCA EAVATNDRSN AGDLLKKIKQ HSLPTGDARQ 300 RLAYYFAEGL EARLAGTGRQ IYHSITAANH TSTVELFKSY HLCIAACCFL KVSLNFSNKN 360 IYNAVAGRKK LHIVHYGVND GFQWPDLLRW LADREGGPPE VRITGIISPQ PGPCPVKQAK 420 ETKRRLSYCA RQFGVPFKFH AIIAKLETVH AEDLDIDPDE VLVVNNMFHF RTLMDESLTF 480 DMENPRDLVL NTIRKMKPSM LIHAAVNGAY SSAFFMTRFR QALNNFTAQF DMMESTMMQN 540 KDKRLLVERH IFARSVMNII ACEGPDRVER PQNYKEWHAR NQRAGLRQLS LDPDIVKMLK 600 DQVKKQYHKH FMIDEDQRWL LLGWKGRVLY ALSTWVAD

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence Send to blast

MPAMAPAREE PLGLVKPAPP PPPPSFFLDQ PSITNGGSQS QQPQDDLALA YISRMLMEED  60
ITDKFFYQHP EHPTLLQAEQ PFAEILSASG IATAGAHGSS ALLPSQGNNT GIMASAFLSS  120
EIHSPPLFLN GTVTAEAPRS GVTMGDLSSM AFFKGMEEAN SFLPTVNVMV DARGRKKRSG  180
MDSETEACMG RSSKQIAVRV LAHNDSEEEE TALELDLLIL NGYDMYSNET MKERGGQAAH  240
QSICRKAPCV RHSARQMVVA DLETLLIRCA EAVATNDRSN AGDLLKKIKQ HSLPTGDARQ  300
RLAYYFAEGL EARLAGTGRQ IYHSITAANH TSTVELFKSY HLCIAACCFL KVSLNFSNKN  360
IYNAVAGRKK LHIVHYGVND GFQWPDLLRW LADREGGPPE VRITGIISPQ PGPCPVKQAK  420
ETKRRLSYCA RQFGVPFKFH AIIAKLETVH AEDLDIDPDE VLVVNNMFHF RTLMDESLTF  480
DMENPRDLVL NTIRKMKPSM LIHAAVNGAY SSAFFMTRFR QALNNFTAQF DMMESTMMQN  540
KDKRLLVERH IFARSVMNII ACEGPDRVER PQNYKEWHAR NQRAGLRQLS LDPDIVKMLK  600
DQVKKQYHKH FMIDEDQRWL LLGWKGRVLY ALSTWVAD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-42	266	635	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	289	LKKIKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172193.1	0.0	scarecrow-like protein 9
TrEMBL	T1M0V8	0.0	T1M0V8_TRIUA; Uncharacterized protein
STRING	TRIUR3_11046-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-120	GRAS family protein