PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10631-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 365aa    MW: 39727.4 Da    PI: 9.134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10631-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-1375124255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+ h + Er RR+r+ + f +L  llP++   p  K++K++i+ +A++YIksL+
  TRIUR3_10631-P1  75 RELHIITERERRRRMSEMFTKLHGLLPTL---P-DKVDKSSIVMEAIHYIKSLE 124
                      7889************************6...3.9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-1671136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.70473123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1475136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1075124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-879129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.47E-688124No hitNo description
CDDcd048730.00529193243No hitNo description
PROSITE profilePS5147314.362217334IPR002902Gnk2-homologous domain
PfamPF016571.7E-8239330IPR002902Gnk2-homologous domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAKDNAPRAT SSDSMSSGKG SKGSKASSRM VLGGAIDKGK GVPKVEEQEE GCRSKGKIMT  60
APVRDGRSGG RRGDRELHII TERERRRRMS EMFTKLHGLL PTLPDKVDKS SIVMEAIHYI  120
KSLEGTVSEL EKQKLERDFA AGGKLAAAAN GGVSSSVAAA MPMGMATPTW SGPNVVLSLS  180
GNYAYIHMSV ARRPGVLTMV TAVLEKHGID VVTTGISSDR SQCIDSGESG WDAAQLLAER  240
VEELMSETIK HAAATAKRYG TGKVWVRGRA EAADMEYVLA QCTPDLTEAE CWSCLNDTRS  300
KLQTSSMHDK VPTSQYGGRL VGVRCSLRYE RVLFFEETSS TLELHKPRVF FYFLPPPSQF  360
PYVVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731551e-98AK373155.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022J13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146364.13e-98transcription factor bHLH95-like
TrEMBLM7YMU10.0M7YMU1_TRIUA; Transcription factor bHLH95
STRINGTRIUR3_10631-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-14bHLH family protein